Protein–RNA interactions for Protein: Q99ML9

Rnf111, E3 ubiquitin-protein ligase Arkadia, mousemouse

Predictions only

Length 989 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf111Q99ML9 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf111Q99ML9 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Rnf111Q99ML9 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf111Q99ML9 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf111Q99ML9 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf111Q99ML9 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf111Q99ML9 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC18.75■□□□□ 0.59
Rnf111Q99ML9 Mir6236-201ENSMUST00000184437 123 ntBASIC18.75■□□□□ 0.59
Rnf111Q99ML9 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Rnf111Q99ML9 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf111Q99ML9 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Rnf111Q99ML9 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC18.75■□□□□ 0.59
Rnf111Q99ML9 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf111Q99ML9 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf111Q99ML9 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf111Q99ML9 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Rnf111Q99ML9 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf111Q99ML9 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf111Q99ML9 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.74■□□□□ 0.59
Rnf111Q99ML9 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf111Q99ML9 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf111Q99ML9 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf111Q99ML9 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf111Q99ML9 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC18.74■□□□□ 0.59
Rnf111Q99ML9 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf111Q99ML9 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf111Q99ML9 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf111Q99ML9 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf111Q99ML9 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf111Q99ML9 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf111Q99ML9 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf111Q99ML9 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
Rnf111Q99ML9 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf111Q99ML9 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf111Q99ML9 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Rnf111Q99ML9 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.73■□□□□ 0.59
Rnf111Q99ML9 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf111Q99ML9 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.73■□□□□ 0.59
Rnf111Q99ML9 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf111Q99ML9 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf111Q99ML9 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Rnf111Q99ML9 Gm43759-201ENSMUST00000196925 1261 ntBASIC18.72■□□□□ 0.59
Rnf111Q99ML9 Gm9207-201ENSMUST00000198773 1115 ntBASIC18.72■□□□□ 0.59
Rnf111Q99ML9 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf111Q99ML9 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf111Q99ML9 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC18.72■□□□□ 0.59
Rnf111Q99ML9 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf111Q99ML9 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf111Q99ML9 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf111Q99ML9 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
Rnf111Q99ML9 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC18.72■□□□□ 0.59
Rnf111Q99ML9 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf111Q99ML9 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf111Q99ML9 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Rnf111Q99ML9 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC18.71■□□□□ 0.59
Rnf111Q99ML9 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf111Q99ML9 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC18.71■□□□□ 0.59
Rnf111Q99ML9 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf111Q99ML9 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC18.71■□□□□ 0.59
Rnf111Q99ML9 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.71■□□□□ 0.59
Rnf111Q99ML9 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf111Q99ML9 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf111Q99ML9 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf111Q99ML9 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf111Q99ML9 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf111Q99ML9 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC18.71■□□□□ 0.59
Rnf111Q99ML9 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf111Q99ML9 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rnf111Q99ML9 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rnf111Q99ML9 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rnf111Q99ML9 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Rnf111Q99ML9 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Rnf111Q99ML9 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rnf111Q99ML9 Gm20100-201ENSMUST00000209418 2272 ntBASIC18.69■□□□□ 0.58
Rnf111Q99ML9 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rnf111Q99ML9 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.69■□□□□ 0.58
Rnf111Q99ML9 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC18.69■□□□□ 0.58
Rnf111Q99ML9 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC18.69■□□□□ 0.58
Rnf111Q99ML9 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rnf111Q99ML9 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
Rnf111Q99ML9 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rnf111Q99ML9 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rnf111Q99ML9 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Rnf111Q99ML9 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rnf111Q99ML9 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Rnf111Q99ML9 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rnf111Q99ML9 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms