Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Mir6236-201ENSMUST00000184437 123 ntBASIC22.51■■□□□ 1.19
Vps53Q8CCB4 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
Vps53Q8CCB4 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Vps53Q8CCB4 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC22.51■■□□□ 1.19
Vps53Q8CCB4 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Vps53Q8CCB4 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC22.5■■□□□ 1.19
Vps53Q8CCB4 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Vps53Q8CCB4 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC22.5■■□□□ 1.19
Vps53Q8CCB4 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
Vps53Q8CCB4 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Vps53Q8CCB4 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Vps53Q8CCB4 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Vps53Q8CCB4 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Vps53Q8CCB4 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Vps53Q8CCB4 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
Vps53Q8CCB4 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Gm43909-201ENSMUST00000203443 1876 ntBASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Gm26571-201ENSMUST00000181399 666 ntBASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Vps53Q8CCB4 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Vps53Q8CCB4 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Vps53Q8CCB4 Gm42642-201ENSMUST00000200683 355 ntBASIC22.48■■□□□ 1.19
Vps53Q8CCB4 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC22.48■■□□□ 1.19
Vps53Q8CCB4 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Vps53Q8CCB4 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Vps53Q8CCB4 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Vps53Q8CCB4 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Vps53Q8CCB4 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Vps53Q8CCB4 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC22.48■■□□□ 1.19
Vps53Q8CCB4 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC22.47■■□□□ 1.19
Vps53Q8CCB4 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
Vps53Q8CCB4 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Vps53Q8CCB4 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
Vps53Q8CCB4 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Vps53Q8CCB4 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
Vps53Q8CCB4 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
Vps53Q8CCB4 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Vps53Q8CCB4 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC22.46■■□□□ 1.19
Vps53Q8CCB4 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Vps53Q8CCB4 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Vps53Q8CCB4 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC22.46■■□□□ 1.19
Vps53Q8CCB4 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Vps53Q8CCB4 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Vps53Q8CCB4 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Vps53Q8CCB4 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Vps53Q8CCB4 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Vps53Q8CCB4 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Vps53Q8CCB4 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Vps53Q8CCB4 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Vps53Q8CCB4 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
Vps53Q8CCB4 AC099934.2-201ENSMUST00000196389 70 ntBASIC22.45■■□□□ 1.18
Vps53Q8CCB4 AC156953.1-201ENSMUST00000196953 70 ntBASIC22.45■■□□□ 1.18
Vps53Q8CCB4 AC157822.2-201ENSMUST00000200291 70 ntBASIC22.45■■□□□ 1.18
Vps53Q8CCB4 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Vps53Q8CCB4 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC22.45■■□□□ 1.18
Vps53Q8CCB4 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Vps53Q8CCB4 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC22.45■■□□□ 1.18
Vps53Q8CCB4 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Vps53Q8CCB4 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Vps53Q8CCB4 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Vps53Q8CCB4 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Vps53Q8CCB4 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Vps53Q8CCB4 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
Vps53Q8CCB4 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Vps53Q8CCB4 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Vps53Q8CCB4 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
Vps53Q8CCB4 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Vps53Q8CCB4 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Vps53Q8CCB4 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Vps53Q8CCB4 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Vps53Q8CCB4 Gm40848-201ENSMUST00000221998 324 ntBASIC22.42■■□□□ 1.18
Vps53Q8CCB4 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Vps53Q8CCB4 Gm15043-201ENSMUST00000118843 1543 ntBASIC22.41■■□□□ 1.18
Vps53Q8CCB4 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms