Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC17.55■□□□□ 0.4
Col6a6Q8C6K9 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col6a6Q8C6K9 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC17.55■□□□□ 0.4
Col6a6Q8C6K9 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col6a6Q8C6K9 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col6a6Q8C6K9 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col6a6Q8C6K9 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col6a6Q8C6K9 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col6a6Q8C6K9 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Col6a6Q8C6K9 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Col6a6Q8C6K9 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col6a6Q8C6K9 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Col6a6Q8C6K9 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
Col6a6Q8C6K9 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Col6a6Q8C6K9 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col6a6Q8C6K9 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col6a6Q8C6K9 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
Col6a6Q8C6K9 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.52■□□□□ 0.39
Col6a6Q8C6K9 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col6a6Q8C6K9 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col6a6Q8C6K9 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col6a6Q8C6K9 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Col6a6Q8C6K9 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC17.51■□□□□ 0.39
Col6a6Q8C6K9 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col6a6Q8C6K9 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Col6a6Q8C6K9 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col6a6Q8C6K9 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.51■□□□□ 0.39
Col6a6Q8C6K9 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Dio3-201ENSMUST00000097228 1449 ntBASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a6Q8C6K9 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col6a6Q8C6K9 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Col6a6Q8C6K9 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Col6a6Q8C6K9 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col6a6Q8C6K9 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col6a6Q8C6K9 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col6a6Q8C6K9 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Col6a6Q8C6K9 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col6a6Q8C6K9 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Col6a6Q8C6K9 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Col6a6Q8C6K9 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col6a6Q8C6K9 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col6a6Q8C6K9 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col6a6Q8C6K9 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
Col6a6Q8C6K9 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col6a6Q8C6K9 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
Col6a6Q8C6K9 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col6a6Q8C6K9 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC17.48■□□□□ 0.39
Col6a6Q8C6K9 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Col6a6Q8C6K9 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col6a6Q8C6K9 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col6a6Q8C6K9 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC17.47■□□□□ 0.39
Col6a6Q8C6K9 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC17.47■□□□□ 0.39
Col6a6Q8C6K9 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col6a6Q8C6K9 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col6a6Q8C6K9 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col6a6Q8C6K9 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col6a6Q8C6K9 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col6a6Q8C6K9 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms