Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
Trub1Q8C0D0 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Trub1Q8C0D0 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trub1Q8C0D0 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trub1Q8C0D0 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
Trub1Q8C0D0 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.01■□□□□ 0.79
Trub1Q8C0D0 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trub1Q8C0D0 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trub1Q8C0D0 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trub1Q8C0D0 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.01■□□□□ 0.79
Trub1Q8C0D0 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trub1Q8C0D0 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trub1Q8C0D0 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trub1Q8C0D0 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Trub1Q8C0D0 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trub1Q8C0D0 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20■□□□□ 0.79
Trub1Q8C0D0 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20■□□□□ 0.79
Trub1Q8C0D0 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trub1Q8C0D0 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trub1Q8C0D0 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trub1Q8C0D0 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trub1Q8C0D0 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Trub1Q8C0D0 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC20■□□□□ 0.79
Trub1Q8C0D0 Gm45417-201ENSMUST00000209533 758 ntBASIC20■□□□□ 0.79
Trub1Q8C0D0 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Trub1Q8C0D0 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trub1Q8C0D0 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trub1Q8C0D0 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trub1Q8C0D0 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trub1Q8C0D0 Smad6-203ENSMUST00000179458 273 ntBASIC19.99■□□□□ 0.79
Trub1Q8C0D0 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC19.99■□□□□ 0.79
Trub1Q8C0D0 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC19.99■□□□□ 0.79
Trub1Q8C0D0 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trub1Q8C0D0 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Trub1Q8C0D0 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trub1Q8C0D0 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trub1Q8C0D0 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trub1Q8C0D0 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trub1Q8C0D0 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Trub1Q8C0D0 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Trub1Q8C0D0 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trub1Q8C0D0 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trub1Q8C0D0 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trub1Q8C0D0 Gm6139-201ENSMUST00000079261 882 ntBASIC19.98■□□□□ 0.79
Trub1Q8C0D0 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trub1Q8C0D0 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trub1Q8C0D0 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
Trub1Q8C0D0 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Trub1Q8C0D0 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trub1Q8C0D0 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC19.97■□□□□ 0.79
Trub1Q8C0D0 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.97■□□□□ 0.79
Trub1Q8C0D0 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trub1Q8C0D0 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC19.97■□□□□ 0.79
Trub1Q8C0D0 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trub1Q8C0D0 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trub1Q8C0D0 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trub1Q8C0D0 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trub1Q8C0D0 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trub1Q8C0D0 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trub1Q8C0D0 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trub1Q8C0D0 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trub1Q8C0D0 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trub1Q8C0D0 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
Trub1Q8C0D0 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trub1Q8C0D0 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trub1Q8C0D0 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trub1Q8C0D0 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trub1Q8C0D0 Gm32699-201ENSMUST00000221728 1988 ntBASIC19.95■□□□□ 0.78
Trub1Q8C0D0 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trub1Q8C0D0 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trub1Q8C0D0 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trub1Q8C0D0 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trub1Q8C0D0 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC19.95■□□□□ 0.78
Trub1Q8C0D0 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trub1Q8C0D0 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trub1Q8C0D0 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trub1Q8C0D0 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trub1Q8C0D0 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trub1Q8C0D0 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trub1Q8C0D0 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC19.94■□□□□ 0.78
Trub1Q8C0D0 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Trub1Q8C0D0 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trub1Q8C0D0 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trub1Q8C0D0 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trub1Q8C0D0 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trub1Q8C0D0 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Trub1Q8C0D0 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trub1Q8C0D0 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trub1Q8C0D0 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Trub1Q8C0D0 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trub1Q8C0D0 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trub1Q8C0D0 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
Trub1Q8C0D0 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trub1Q8C0D0 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC19.92■□□□□ 0.78
Trub1Q8C0D0 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Trub1Q8C0D0 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Trub1Q8C0D0 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trub1Q8C0D0 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Trub1Q8C0D0 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trub1Q8C0D0 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms