Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC23.35■■□□□ 1.33
Npc1l1Q6T3U4 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Npc1l1Q6T3U4 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
Npc1l1Q6T3U4 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
Npc1l1Q6T3U4 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Npc1l1Q6T3U4 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC23.35■■□□□ 1.33
Npc1l1Q6T3U4 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
Npc1l1Q6T3U4 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Npc1l1Q6T3U4 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Npc1l1Q6T3U4 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Npc1l1Q6T3U4 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Npc1l1Q6T3U4 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Npc1l1Q6T3U4 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Npc1l1Q6T3U4 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC23.33■■□□□ 1.33
Npc1l1Q6T3U4 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Npc1l1Q6T3U4 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC23.33■■□□□ 1.33
Npc1l1Q6T3U4 Reep4-203ENSMUST00000226563 1444 ntBASIC23.33■■□□□ 1.33
Npc1l1Q6T3U4 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Npc1l1Q6T3U4 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Npc1l1Q6T3U4 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Npc1l1Q6T3U4 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Npc1l1Q6T3U4 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
Npc1l1Q6T3U4 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
Npc1l1Q6T3U4 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Npc1l1Q6T3U4 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Npc1l1Q6T3U4 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Npc1l1Q6T3U4 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC23.33■■□□□ 1.32
Npc1l1Q6T3U4 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC23.33■■□□□ 1.32
Npc1l1Q6T3U4 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
Npc1l1Q6T3U4 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC23.32■■□□□ 1.32
Npc1l1Q6T3U4 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Npc1l1Q6T3U4 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Npc1l1Q6T3U4 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC23.32■■□□□ 1.32
Npc1l1Q6T3U4 Gm12669-201ENSMUST00000122162 1009 ntBASIC23.32■■□□□ 1.32
Npc1l1Q6T3U4 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC23.32■■□□□ 1.32
Npc1l1Q6T3U4 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Npc1l1Q6T3U4 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
Npc1l1Q6T3U4 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Npc1l1Q6T3U4 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Npc1l1Q6T3U4 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Npc1l1Q6T3U4 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Npc1l1Q6T3U4 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Npc1l1Q6T3U4 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC23.31■■□□□ 1.32
Npc1l1Q6T3U4 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
Npc1l1Q6T3U4 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Npc1l1Q6T3U4 Gm13234-201ENSMUST00000120010 747 ntBASIC23.31■■□□□ 1.32
Npc1l1Q6T3U4 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Npc1l1Q6T3U4 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Npc1l1Q6T3U4 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Npc1l1Q6T3U4 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Npc1l1Q6T3U4 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC23.3■■□□□ 1.32
Npc1l1Q6T3U4 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Npc1l1Q6T3U4 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Npc1l1Q6T3U4 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Npc1l1Q6T3U4 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Npc1l1Q6T3U4 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Npc1l1Q6T3U4 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Npc1l1Q6T3U4 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Npc1l1Q6T3U4 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Npc1l1Q6T3U4 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Npc1l1Q6T3U4 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Npc1l1Q6T3U4 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
Npc1l1Q6T3U4 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
Npc1l1Q6T3U4 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Npc1l1Q6T3U4 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC23.29■■□□□ 1.32
Npc1l1Q6T3U4 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC23.29■■□□□ 1.32
Npc1l1Q6T3U4 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC23.29■■□□□ 1.32
Npc1l1Q6T3U4 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
Npc1l1Q6T3U4 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Npc1l1Q6T3U4 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Npc1l1Q6T3U4 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Npc1l1Q6T3U4 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC23.28■■□□□ 1.32
Npc1l1Q6T3U4 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC23.28■■□□□ 1.32
Npc1l1Q6T3U4 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Npc1l1Q6T3U4 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Npc1l1Q6T3U4 Gm20100-201ENSMUST00000209418 2272 ntBASIC23.28■■□□□ 1.32
Npc1l1Q6T3U4 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Npc1l1Q6T3U4 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Npc1l1Q6T3U4 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Npc1l1Q6T3U4 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
Npc1l1Q6T3U4 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
Npc1l1Q6T3U4 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Npc1l1Q6T3U4 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Npc1l1Q6T3U4 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Npc1l1Q6T3U4 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Npc1l1Q6T3U4 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Npc1l1Q6T3U4 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Npc1l1Q6T3U4 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Npc1l1Q6T3U4 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Npc1l1Q6T3U4 Gm12933-201ENSMUST00000120203 872 ntBASIC23.26■■□□□ 1.31
Npc1l1Q6T3U4 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Npc1l1Q6T3U4 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Npc1l1Q6T3U4 CT030146.1-201ENSMUST00000220919 217 ntBASIC23.26■■□□□ 1.31
Npc1l1Q6T3U4 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Npc1l1Q6T3U4 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Npc1l1Q6T3U4 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Npc1l1Q6T3U4 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC23.25■■□□□ 1.31
Npc1l1Q6T3U4 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Npc1l1Q6T3U4 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Npc1l1Q6T3U4 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 57.5 ms