Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb4Q6P8W9 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb4Q6P8W9 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb4Q6P8W9 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb4Q6P8W9 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb4Q6P8W9 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb4Q6P8W9 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
Hmgb4Q6P8W9 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb4Q6P8W9 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Hmgb4Q6P8W9 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb4Q6P8W9 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb4Q6P8W9 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb4Q6P8W9 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb4Q6P8W9 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb4Q6P8W9 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Hmgb4Q6P8W9 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb4Q6P8W9 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb4Q6P8W9 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb4Q6P8W9 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb4Q6P8W9 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb4Q6P8W9 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb4Q6P8W9 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Hmgb4Q6P8W9 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Hmgb4Q6P8W9 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Hmgb4Q6P8W9 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb4Q6P8W9 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb4Q6P8W9 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb4Q6P8W9 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb4Q6P8W9 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb4Q6P8W9 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb4Q6P8W9 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.23■□□□□ 0.83
Hmgb4Q6P8W9 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Hmgb4Q6P8W9 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Hmgb4Q6P8W9 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Hmgb4Q6P8W9 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb4Q6P8W9 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb4Q6P8W9 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb4Q6P8W9 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.22■□□□□ 0.83
Hmgb4Q6P8W9 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb4Q6P8W9 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.22■□□□□ 0.83
Hmgb4Q6P8W9 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb4Q6P8W9 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Hmgb4Q6P8W9 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb4Q6P8W9 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb4Q6P8W9 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb4Q6P8W9 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb4Q6P8W9 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb4Q6P8W9 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb4Q6P8W9 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb4Q6P8W9 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Hmgb4Q6P8W9 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb4Q6P8W9 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb4Q6P8W9 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.21■□□□□ 0.83
Hmgb4Q6P8W9 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Hmgb4Q6P8W9 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb4Q6P8W9 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb4Q6P8W9 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb4Q6P8W9 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb4Q6P8W9 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.21■□□□□ 0.83
Hmgb4Q6P8W9 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb4Q6P8W9 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmgb4Q6P8W9 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Hmgb4Q6P8W9 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb4Q6P8W9 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb4Q6P8W9 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.19■□□□□ 0.82
Hmgb4Q6P8W9 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Hmgb4Q6P8W9 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb4Q6P8W9 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.19■□□□□ 0.82
Hmgb4Q6P8W9 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb4Q6P8W9 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb4Q6P8W9 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb4Q6P8W9 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb4Q6P8W9 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb4Q6P8W9 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb4Q6P8W9 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb4Q6P8W9 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.18■□□□□ 0.82
Hmgb4Q6P8W9 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb4Q6P8W9 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb4Q6P8W9 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.18■□□□□ 0.82
Hmgb4Q6P8W9 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
Hmgb4Q6P8W9 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
Hmgb4Q6P8W9 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Hmgb4Q6P8W9 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb4Q6P8W9 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb4Q6P8W9 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb4Q6P8W9 Reep4-203ENSMUST00000226563 1444 ntBASIC20.18■□□□□ 0.82
Hmgb4Q6P8W9 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms