Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Shkbp1Q6P7W2 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shkbp1Q6P7W2 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Shkbp1Q6P7W2 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
Shkbp1Q6P7W2 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shkbp1Q6P7W2 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.28■□□□□ 0.84
Shkbp1Q6P7W2 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shkbp1Q6P7W2 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shkbp1Q6P7W2 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shkbp1Q6P7W2 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shkbp1Q6P7W2 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shkbp1Q6P7W2 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shkbp1Q6P7W2 Gm7860-201ENSMUST00000121190 879 ntBASIC20.27■□□□□ 0.84
Shkbp1Q6P7W2 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shkbp1Q6P7W2 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shkbp1Q6P7W2 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.27■□□□□ 0.84
Shkbp1Q6P7W2 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shkbp1Q6P7W2 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Gm7290-201ENSMUST00000104990 617 ntBASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Gm12918-201ENSMUST00000120234 636 ntBASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Gm15710-201ENSMUST00000121821 636 ntBASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Gm5075-201ENSMUST00000196916 622 ntBASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shkbp1Q6P7W2 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Gm10653-202ENSMUST00000139570 835 ntBASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shkbp1Q6P7W2 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Shkbp1Q6P7W2 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.24■□□□□ 0.83
Shkbp1Q6P7W2 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC20.24■□□□□ 0.83
Shkbp1Q6P7W2 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shkbp1Q6P7W2 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.24■□□□□ 0.83
Shkbp1Q6P7W2 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shkbp1Q6P7W2 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shkbp1Q6P7W2 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.24■□□□□ 0.83
Shkbp1Q6P7W2 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
Shkbp1Q6P7W2 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Shkbp1Q6P7W2 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shkbp1Q6P7W2 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shkbp1Q6P7W2 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Shkbp1Q6P7W2 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Shkbp1Q6P7W2 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shkbp1Q6P7W2 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shkbp1Q6P7W2 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shkbp1Q6P7W2 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shkbp1Q6P7W2 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Shkbp1Q6P7W2 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shkbp1Q6P7W2 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.23■□□□□ 0.83
Shkbp1Q6P7W2 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Shkbp1Q6P7W2 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Shkbp1Q6P7W2 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC20.21■□□□□ 0.83
Shkbp1Q6P7W2 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Shkbp1Q6P7W2 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Shkbp1Q6P7W2 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
Shkbp1Q6P7W2 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shkbp1Q6P7W2 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shkbp1Q6P7W2 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shkbp1Q6P7W2 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shkbp1Q6P7W2 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shkbp1Q6P7W2 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.2■□□□□ 0.82
Shkbp1Q6P7W2 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms