Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm715-201ENSMUST00000117865 831 ntBASIC24.89■■□□□ 1.58
Ddb1Q3U1J4 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC24.89■■□□□ 1.58
Ddb1Q3U1J4 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC24.89■■□□□ 1.58
Ddb1Q3U1J4 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC24.88■■□□□ 1.57
Ddb1Q3U1J4 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
Ddb1Q3U1J4 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Ddb1Q3U1J4 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Ddb1Q3U1J4 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Ddb1Q3U1J4 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Ddb1Q3U1J4 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Ddb1Q3U1J4 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC24.87■■□□□ 1.57
Ddb1Q3U1J4 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC24.87■■□□□ 1.57
Ddb1Q3U1J4 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Ddb1Q3U1J4 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Ddb1Q3U1J4 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
Ddb1Q3U1J4 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Ddb1Q3U1J4 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Ddb1Q3U1J4 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Ddb1Q3U1J4 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
Ddb1Q3U1J4 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Ddb1Q3U1J4 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
Ddb1Q3U1J4 Gm7860-201ENSMUST00000121190 879 ntBASIC24.86■■□□□ 1.57
Ddb1Q3U1J4 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Ddb1Q3U1J4 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Ddb1Q3U1J4 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
Ddb1Q3U1J4 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
Ddb1Q3U1J4 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC24.85■■□□□ 1.57
Ddb1Q3U1J4 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC24.85■■□□□ 1.57
Ddb1Q3U1J4 Gm2559-201ENSMUST00000201323 363 ntBASIC24.85■■□□□ 1.57
Ddb1Q3U1J4 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC24.85■■□□□ 1.57
Ddb1Q3U1J4 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC24.85■■□□□ 1.57
Ddb1Q3U1J4 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC24.84■■□□□ 1.57
Ddb1Q3U1J4 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Ddb1Q3U1J4 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
Ddb1Q3U1J4 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC24.84■■□□□ 1.57
Ddb1Q3U1J4 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
Ddb1Q3U1J4 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Ddb1Q3U1J4 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
Ddb1Q3U1J4 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Ddb1Q3U1J4 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Ddb1Q3U1J4 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
Ddb1Q3U1J4 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
Ddb1Q3U1J4 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
Ddb1Q3U1J4 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC24.84■■□□□ 1.57
Ddb1Q3U1J4 Gm43909-201ENSMUST00000203443 1876 ntBASIC24.83■■□□□ 1.57
Ddb1Q3U1J4 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC24.83■■□□□ 1.57
Ddb1Q3U1J4 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
Ddb1Q3U1J4 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC24.83■■□□□ 1.57
Ddb1Q3U1J4 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
Ddb1Q3U1J4 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
Ddb1Q3U1J4 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.56
Ddb1Q3U1J4 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
Ddb1Q3U1J4 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Ddb1Q3U1J4 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC24.82■■□□□ 1.56
Ddb1Q3U1J4 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
Ddb1Q3U1J4 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Ddb1Q3U1J4 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
Ddb1Q3U1J4 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
Ddb1Q3U1J4 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Ddb1Q3U1J4 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC24.81■■□□□ 1.56
Ddb1Q3U1J4 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Ddb1Q3U1J4 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
Ddb1Q3U1J4 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
Ddb1Q3U1J4 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
Ddb1Q3U1J4 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC24.8■■□□□ 1.56
Ddb1Q3U1J4 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
Ddb1Q3U1J4 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC24.8■■□□□ 1.56
Ddb1Q3U1J4 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Ddb1Q3U1J4 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
Ddb1Q3U1J4 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Ddb1Q3U1J4 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
Ddb1Q3U1J4 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC24.79■■□□□ 1.56
Ddb1Q3U1J4 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC24.79■■□□□ 1.56
Ddb1Q3U1J4 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
Ddb1Q3U1J4 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
Ddb1Q3U1J4 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
Ddb1Q3U1J4 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
Ddb1Q3U1J4 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
Ddb1Q3U1J4 AC154649.1-201ENSMUST00000227392 384 ntBASIC24.79■■□□□ 1.56
Ddb1Q3U1J4 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC24.79■■□□□ 1.56
Ddb1Q3U1J4 Dio3-201ENSMUST00000097228 1449 ntBASIC24.78■■□□□ 1.56
Ddb1Q3U1J4 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
Ddb1Q3U1J4 Gm15565-201ENSMUST00000118890 427 ntBASIC24.78■■□□□ 1.56
Ddb1Q3U1J4 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC24.78■■□□□ 1.56
Ddb1Q3U1J4 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Ddb1Q3U1J4 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
Ddb1Q3U1J4 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Ddb1Q3U1J4 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
Ddb1Q3U1J4 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
Ddb1Q3U1J4 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC24.77■■□□□ 1.56
Ddb1Q3U1J4 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
Ddb1Q3U1J4 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
Ddb1Q3U1J4 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Ddb1Q3U1J4 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC24.77■■□□□ 1.56
Ddb1Q3U1J4 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms