Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC30.59■■■□□ 2.49
Col17a1Q07563 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Col17a1Q07563 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC30.59■■■□□ 2.49
Col17a1Q07563 Gm11539-201ENSMUST00000119837 557 ntBASIC30.59■■■□□ 2.49
Col17a1Q07563 Gm13436-201ENSMUST00000120418 567 ntBASIC30.59■■■□□ 2.49
Col17a1Q07563 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC30.59■■■□□ 2.49
Col17a1Q07563 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Col17a1Q07563 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Col17a1Q07563 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
Col17a1Q07563 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
Col17a1Q07563 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Col17a1Q07563 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
Col17a1Q07563 AC133598.3-202ENSMUST00000224219 531 ntBASIC30.57■■■□□ 2.48
Col17a1Q07563 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
Col17a1Q07563 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC30.57■■■□□ 2.48
Col17a1Q07563 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Col17a1Q07563 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Col17a1Q07563 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Col17a1Q07563 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Col17a1Q07563 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Col17a1Q07563 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Col17a1Q07563 Gm13158-201ENSMUST00000122007 736 ntBASIC30.56■■■□□ 2.48
Col17a1Q07563 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC30.56■■■□□ 2.48
Col17a1Q07563 AC130713.1-201ENSMUST00000228853 1096 ntBASIC30.56■■■□□ 2.48
Col17a1Q07563 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
Col17a1Q07563 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
Col17a1Q07563 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC30.55■■■□□ 2.48
Col17a1Q07563 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC30.55■■■□□ 2.48
Col17a1Q07563 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC30.55■■■□□ 2.48
Col17a1Q07563 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Col17a1Q07563 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Col17a1Q07563 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC30.54■■■□□ 2.48
Col17a1Q07563 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
Col17a1Q07563 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC30.54■■■□□ 2.48
Col17a1Q07563 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Col17a1Q07563 AC163280.1-201ENSMUST00000228194 1100 ntBASIC30.53■■■□□ 2.48
Col17a1Q07563 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Col17a1Q07563 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Col17a1Q07563 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Col17a1Q07563 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC30.52■■■□□ 2.48
Col17a1Q07563 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Col17a1Q07563 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Col17a1Q07563 Gm44549-201ENSMUST00000208351 577 ntBASIC30.52■■■□□ 2.48
Col17a1Q07563 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC30.52■■■□□ 2.48
Col17a1Q07563 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC30.52■■■□□ 2.48
Col17a1Q07563 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC30.52■■■□□ 2.48
Col17a1Q07563 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
Col17a1Q07563 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
Col17a1Q07563 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC30.51■■■□□ 2.48
Col17a1Q07563 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
Col17a1Q07563 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC30.51■■■□□ 2.48
Col17a1Q07563 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
Col17a1Q07563 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
Col17a1Q07563 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
Col17a1Q07563 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Col17a1Q07563 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Col17a1Q07563 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Col17a1Q07563 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Col17a1Q07563 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
Col17a1Q07563 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
Col17a1Q07563 Gm15847-201ENSMUST00000121417 1065 ntBASIC30.5■■■□□ 2.47
Col17a1Q07563 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC30.5■■■□□ 2.47
Col17a1Q07563 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC30.5■■■□□ 2.47
Col17a1Q07563 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
Col17a1Q07563 Gm10013-201ENSMUST00000106074 672 ntBASIC30.49■■■□□ 2.47
Col17a1Q07563 AA414768-201ENSMUST00000121924 1257 ntBASIC30.49■■■□□ 2.47
Col17a1Q07563 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
Col17a1Q07563 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC30.49■■■□□ 2.47
Col17a1Q07563 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Col17a1Q07563 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Col17a1Q07563 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC30.48■■■□□ 2.47
Col17a1Q07563 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Col17a1Q07563 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Col17a1Q07563 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Col17a1Q07563 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
Col17a1Q07563 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Col17a1Q07563 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC30.47■■■□□ 2.47
Col17a1Q07563 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC30.47■■■□□ 2.47
Col17a1Q07563 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Col17a1Q07563 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
Col17a1Q07563 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC30.46■■■□□ 2.47
Col17a1Q07563 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
Col17a1Q07563 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
Col17a1Q07563 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Col17a1Q07563 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC30.46■■■□□ 2.47
Col17a1Q07563 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Col17a1Q07563 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
Col17a1Q07563 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
Col17a1Q07563 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
Col17a1Q07563 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Col17a1Q07563 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.46
Col17a1Q07563 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Col17a1Q07563 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Col17a1Q07563 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Col17a1Q07563 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Col17a1Q07563 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Col17a1Q07563 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC30.44■■■□□ 2.46
Col17a1Q07563 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Col17a1Q07563 Arhgef4-208ENSMUST00000211073 171 ntBASIC30.44■■■□□ 2.46
Col17a1Q07563 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC30.43■■■□□ 2.46
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms