Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lig3P97386 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lig3P97386 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lig3P97386 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Lig3P97386 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Lig3P97386 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Lig3P97386 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC20.94■□□□□ 0.94
Lig3P97386 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC20.94■□□□□ 0.94
Lig3P97386 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.94■□□□□ 0.94
Lig3P97386 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC20.94■□□□□ 0.94
Lig3P97386 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Lig3P97386 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Lig3P97386 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Lig3P97386 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Lig3P97386 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Lig3P97386 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Lig3P97386 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
Lig3P97386 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lig3P97386 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lig3P97386 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lig3P97386 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Lig3P97386 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20.93■□□□□ 0.94
Lig3P97386 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.93■□□□□ 0.94
Lig3P97386 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lig3P97386 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lig3P97386 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lig3P97386 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lig3P97386 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
Lig3P97386 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lig3P97386 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lig3P97386 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lig3P97386 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lig3P97386 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Lig3P97386 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Lig3P97386 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lig3P97386 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lig3P97386 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lig3P97386 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lig3P97386 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lig3P97386 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lig3P97386 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lig3P97386 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Lig3P97386 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Lig3P97386 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Lig3P97386 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Lig3P97386 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Lig3P97386 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lig3P97386 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lig3P97386 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.9■□□□□ 0.94
Lig3P97386 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.9■□□□□ 0.94
Lig3P97386 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Lig3P97386 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Lig3P97386 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lig3P97386 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Lig3P97386 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Lig3P97386 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Lig3P97386 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Lig3P97386 Nespas-201ENSMUST00000143738 1083 ntBASIC20.89■□□□□ 0.93
Lig3P97386 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Lig3P97386 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.89■□□□□ 0.93
Lig3P97386 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Lig3P97386 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.89■□□□□ 0.93
Lig3P97386 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Lig3P97386 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Lig3P97386 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Lig3P97386 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Lig3P97386 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Lig3P97386 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Lig3P97386 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Lig3P97386 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Lig3P97386 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Lig3P97386 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Lig3P97386 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Lig3P97386 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.88■□□□□ 0.93
Lig3P97386 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.88■□□□□ 0.93
Lig3P97386 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Lig3P97386 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Lig3P97386 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Lig3P97386 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Lig3P97386 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Lig3P97386 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20.88■□□□□ 0.93
Lig3P97386 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.87■□□□□ 0.93
Lig3P97386 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Lig3P97386 AC165080.2-201ENSMUST00000217491 1530 ntBASIC20.87■□□□□ 0.93
Lig3P97386 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lig3P97386 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms