Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shox2P70390 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shox2P70390 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shox2P70390 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shox2P70390 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.26■□□□□ 0.67
Shox2P70390 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shox2P70390 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.25■□□□□ 0.67
Shox2P70390 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Shox2P70390 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Shox2P70390 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Shox2P70390 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shox2P70390 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shox2P70390 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Shox2P70390 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Shox2P70390 Mir6236-201ENSMUST00000184437 123 ntBASIC19.24■□□□□ 0.67
Shox2P70390 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shox2P70390 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC19.24■□□□□ 0.67
Shox2P70390 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shox2P70390 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shox2P70390 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shox2P70390 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC19.23■□□□□ 0.67
Shox2P70390 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Shox2P70390 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shox2P70390 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Shox2P70390 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shox2P70390 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
Shox2P70390 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shox2P70390 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shox2P70390 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Shox2P70390 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shox2P70390 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shox2P70390 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shox2P70390 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Shox2P70390 AC123834.2-201ENSMUST00000224038 2340 ntBASIC19.22■□□□□ 0.67
Shox2P70390 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shox2P70390 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shox2P70390 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shox2P70390 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shox2P70390 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.21■□□□□ 0.67
Shox2P70390 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shox2P70390 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shox2P70390 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shox2P70390 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shox2P70390 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shox2P70390 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Shox2P70390 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.21■□□□□ 0.67
Shox2P70390 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
Shox2P70390 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Shox2P70390 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shox2P70390 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC19.2■□□□□ 0.66
Shox2P70390 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC19.2■□□□□ 0.66
Shox2P70390 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Shox2P70390 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC19.2■□□□□ 0.66
Shox2P70390 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Shox2P70390 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shox2P70390 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Shox2P70390 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Shox2P70390 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shox2P70390 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Shox2P70390 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shox2P70390 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Shox2P70390 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Shox2P70390 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Shox2P70390 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shox2P70390 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.19■□□□□ 0.66
Shox2P70390 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shox2P70390 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Shox2P70390 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shox2P70390 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shox2P70390 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shox2P70390 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Shox2P70390 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.18■□□□□ 0.66
Shox2P70390 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Shox2P70390 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Shox2P70390 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Shox2P70390 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Shox2P70390 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.18■□□□□ 0.66
Shox2P70390 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shox2P70390 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shox2P70390 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shox2P70390 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shox2P70390 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shox2P70390 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Shox2P70390 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shox2P70390 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shox2P70390 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC19.17■□□□□ 0.66
Shox2P70390 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shox2P70390 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shox2P70390 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shox2P70390 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shox2P70390 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Shox2P70390 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shox2P70390 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Shox2P70390 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
Shox2P70390 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Shox2P70390 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shox2P70390 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shox2P70390 Gm7143-201ENSMUST00000222811 859 ntBASIC19.16■□□□□ 0.66
Shox2P70390 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shox2P70390 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms