Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdh11P55288 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdh11P55288 Gm7143-201ENSMUST00000222811 859 ntBASIC17.56■□□□□ 0.4
Cdh11P55288 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdh11P55288 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdh11P55288 AC166356.1-201ENSMUST00000228236 1426 ntBASIC17.55■□□□□ 0.4
Cdh11P55288 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdh11P55288 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdh11P55288 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdh11P55288 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdh11P55288 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdh11P55288 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdh11P55288 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cdh11P55288 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdh11P55288 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
Cdh11P55288 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cdh11P55288 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdh11P55288 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdh11P55288 Dapk1-207ENSMUST00000226059 5009 ntBASIC17.54■□□□□ 0.4
Cdh11P55288 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Cdh11P55288 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Cdh11P55288 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdh11P55288 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC17.53■□□□□ 0.4
Cdh11P55288 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Cdh11P55288 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Cdh11P55288 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cdh11P55288 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdh11P55288 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdh11P55288 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Cdh11P55288 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cdh11P55288 Gm10657-201ENSMUST00000193528 1031 ntBASIC17.53■□□□□ 0.4
Cdh11P55288 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC17.53■□□□□ 0.4
Cdh11P55288 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdh11P55288 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdh11P55288 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdh11P55288 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdh11P55288 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdh11P55288 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.53■□□□□ 0.4
Cdh11P55288 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdh11P55288 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdh11P55288 Golph3-205ENSMUST00000228671 2842 ntBASIC17.53■□□□□ 0.4
Cdh11P55288 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC17.52■□□□□ 0.4
Cdh11P55288 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdh11P55288 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cdh11P55288 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Cdh11P55288 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdh11P55288 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdh11P55288 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdh11P55288 Gm6802-201ENSMUST00000167843 1983 ntBASIC17.52■□□□□ 0.4
Cdh11P55288 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdh11P55288 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdh11P55288 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC17.52■□□□□ 0.4
Cdh11P55288 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC17.52■□□□□ 0.4
Cdh11P55288 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cdh11P55288 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdh11P55288 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC17.52■□□□□ 0.4
Cdh11P55288 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdh11P55288 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
Cdh11P55288 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdh11P55288 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC17.52■□□□□ 0.39
Cdh11P55288 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cdh11P55288 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cdh11P55288 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Cdh11P55288 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Cdh11P55288 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cdh11P55288 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cdh11P55288 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cdh11P55288 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdh11P55288 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
Cdh11P55288 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdh11P55288 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Cdh11P55288 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC17.51■□□□□ 0.39
Cdh11P55288 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdh11P55288 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Cdh11P55288 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC17.51■□□□□ 0.39
Cdh11P55288 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdh11P55288 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdh11P55288 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdh11P55288 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdh11P55288 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Cdh11P55288 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdh11P55288 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdh11P55288 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cdh11P55288 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Cdh11P55288 Gm8770-201ENSMUST00000121113 1109 ntBASIC17.5■□□□□ 0.39
Cdh11P55288 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Cdh11P55288 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 66 ms