Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nr1i3O35627 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Nr1i3O35627 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Nr1i3O35627 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Nr1i3O35627 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Nr1i3O35627 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Nr1i3O35627 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Nr1i3O35627 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Nr1i3O35627 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Nr1i3O35627 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Nr1i3O35627 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Nr1i3O35627 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Nr1i3O35627 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.82■□□□□ 0.92
Nr1i3O35627 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Nr1i3O35627 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
Nr1i3O35627 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Nr1i3O35627 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Nr1i3O35627 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC20.82■□□□□ 0.92
Nr1i3O35627 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Nr1i3O35627 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC20.81■□□□□ 0.92
Nr1i3O35627 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nr1i3O35627 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nr1i3O35627 Gm32699-201ENSMUST00000221728 1988 ntBASIC20.81■□□□□ 0.92
Nr1i3O35627 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Nr1i3O35627 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nr1i3O35627 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Nr1i3O35627 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nr1i3O35627 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Nr1i3O35627 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.81■□□□□ 0.92
Nr1i3O35627 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nr1i3O35627 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nr1i3O35627 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nr1i3O35627 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nr1i3O35627 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nr1i3O35627 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nr1i3O35627 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC20.8■□□□□ 0.92
Nr1i3O35627 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.8■□□□□ 0.92
Nr1i3O35627 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Nr1i3O35627 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Nr1i3O35627 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nr1i3O35627 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Nr1i3O35627 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nr1i3O35627 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Nr1i3O35627 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Nr1i3O35627 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nr1i3O35627 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Nr1i3O35627 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nr1i3O35627 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nr1i3O35627 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nr1i3O35627 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nr1i3O35627 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nr1i3O35627 Gm5576-201ENSMUST00000075809 1236 ntBASIC20.79■□□□□ 0.92
Nr1i3O35627 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nr1i3O35627 Gm18688-201ENSMUST00000204695 1859 ntBASIC20.79■□□□□ 0.92
Nr1i3O35627 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.79■□□□□ 0.92
Nr1i3O35627 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.78■□□□□ 0.92
Nr1i3O35627 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC20.78■□□□□ 0.92
Nr1i3O35627 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Nr1i3O35627 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.78■□□□□ 0.92
Nr1i3O35627 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.78■□□□□ 0.92
Nr1i3O35627 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Nr1i3O35627 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Nr1i3O35627 Gm37352-201ENSMUST00000193908 2181 ntBASIC20.78■□□□□ 0.92
Nr1i3O35627 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Nr1i3O35627 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Nr1i3O35627 Gm5784-201ENSMUST00000179344 2478 ntBASIC20.77■□□□□ 0.92
Nr1i3O35627 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Nr1i3O35627 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Nr1i3O35627 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.77■□□□□ 0.92
Nr1i3O35627 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Nr1i3O35627 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Nr1i3O35627 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Nr1i3O35627 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Nr1i3O35627 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Nr1i3O35627 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Nr1i3O35627 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Nr1i3O35627 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Nr1i3O35627 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Nr1i3O35627 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Nr1i3O35627 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Nr1i3O35627 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.76■□□□□ 0.91
Nr1i3O35627 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Nr1i3O35627 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nr1i3O35627 Gm9847-201ENSMUST00000052528 599 ntBASIC20.76■□□□□ 0.91
Nr1i3O35627 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nr1i3O35627 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nr1i3O35627 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nr1i3O35627 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Nr1i3O35627 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1i3O35627 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1i3O35627 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1i3O35627 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1i3O35627 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1i3O35627 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1i3O35627 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1i3O35627 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1i3O35627 Gm43231-201ENSMUST00000202960 2258 ntBASIC20.75■□□□□ 0.91
Nr1i3O35627 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC20.75■□□□□ 0.91
Nr1i3O35627 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1i3O35627 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms