Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Chd3B1AR17 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Chd3B1AR17 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC19.06■□□□□ 0.64
Chd3B1AR17 Gm13146-201ENSMUST00000118508 780 ntBASIC19.06■□□□□ 0.64
Chd3B1AR17 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.06■□□□□ 0.64
Chd3B1AR17 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC19.06■□□□□ 0.64
Chd3B1AR17 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Chd3B1AR17 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC19.06■□□□□ 0.64
Chd3B1AR17 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Chd3B1AR17 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Chd3B1AR17 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Chd3B1AR17 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Chd3B1AR17 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Chd3B1AR17 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC19.05■□□□□ 0.64
Chd3B1AR17 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Chd3B1AR17 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Chd3B1AR17 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Chd3B1AR17 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Chd3B1AR17 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC19.04■□□□□ 0.64
Chd3B1AR17 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Chd3B1AR17 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Chd3B1AR17 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Chd3B1AR17 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC19.04■□□□□ 0.64
Chd3B1AR17 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Chd3B1AR17 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
Chd3B1AR17 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Chd3B1AR17 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC19.04■□□□□ 0.64
Chd3B1AR17 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Chd3B1AR17 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Chd3B1AR17 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Chd3B1AR17 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Chd3B1AR17 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Chd3B1AR17 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC19.03■□□□□ 0.64
Chd3B1AR17 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Chd3B1AR17 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.03■□□□□ 0.64
Chd3B1AR17 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.03■□□□□ 0.64
Chd3B1AR17 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Chd3B1AR17 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Chd3B1AR17 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Chd3B1AR17 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Chd3B1AR17 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC19.02■□□□□ 0.64
Chd3B1AR17 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Chd3B1AR17 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Chd3B1AR17 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Chd3B1AR17 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19.02■□□□□ 0.64
Chd3B1AR17 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Chd3B1AR17 Gm7514-201ENSMUST00000209475 934 ntBASIC19.02■□□□□ 0.63
Chd3B1AR17 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC19.02■□□□□ 0.63
Chd3B1AR17 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
Chd3B1AR17 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Chd3B1AR17 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC19.01■□□□□ 0.63
Chd3B1AR17 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Chd3B1AR17 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Chd3B1AR17 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Chd3B1AR17 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Chd3B1AR17 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Chd3B1AR17 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Chd3B1AR17 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Chd3B1AR17 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.01■□□□□ 0.63
Chd3B1AR17 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Chd3B1AR17 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC19■□□□□ 0.63
Chd3B1AR17 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Chd3B1AR17 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Chd3B1AR17 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC19■□□□□ 0.63
Chd3B1AR17 CT010467.1-202ENSMUST00000205406 714 ntBASIC19■□□□□ 0.63
Chd3B1AR17 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Chd3B1AR17 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC19■□□□□ 0.63
Chd3B1AR17 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC19■□□□□ 0.63
Chd3B1AR17 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Chd3B1AR17 Gm12933-201ENSMUST00000120203 872 ntBASIC18.99■□□□□ 0.63
Chd3B1AR17 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Chd3B1AR17 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chd3B1AR17 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.99■□□□□ 0.63
Chd3B1AR17 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chd3B1AR17 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Chd3B1AR17 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Chd3B1AR17 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
Chd3B1AR17 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Chd3B1AR17 Gm38205-201ENSMUST00000192243 258 ntBASIC18.99■□□□□ 0.63
Chd3B1AR17 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Chd3B1AR17 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
Chd3B1AR17 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Chd3B1AR17 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Chd3B1AR17 Gm32699-201ENSMUST00000221728 1988 ntBASIC18.98■□□□□ 0.63
Chd3B1AR17 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Chd3B1AR17 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chd3B1AR17 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chd3B1AR17 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chd3B1AR17 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chd3B1AR17 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chd3B1AR17 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chd3B1AR17 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chd3B1AR17 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Chd3B1AR17 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chd3B1AR17 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Chd3B1AR17 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Chd3B1AR17 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
Chd3B1AR17 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Chd3B1AR17 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Chd3B1AR17 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms