Protein–RNA interactions for Protein: Q9JJV9

Scn5a, Sodium channel protein type 5 subunit alpha, mousemouse

Predictions only

Length 2,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn5aQ9JJV9 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn5aQ9JJV9 Gm20049-201ENSMUST00000219950 730 ntBASIC20.34■□□□□ 0.85
Scn5aQ9JJV9 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn5aQ9JJV9 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Scn5aQ9JJV9 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Scn5aQ9JJV9 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Scn5aQ9JJV9 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Scn5aQ9JJV9 Gm22240-201ENSMUST00000175225 82 ntBASIC20.33■□□□□ 0.85
Scn5aQ9JJV9 Gm37856-201ENSMUST00000191634 999 ntBASIC20.33■□□□□ 0.85
Scn5aQ9JJV9 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Scn5aQ9JJV9 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Scn5aQ9JJV9 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.84
Scn5aQ9JJV9 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Scn5aQ9JJV9 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.33■□□□□ 0.84
Scn5aQ9JJV9 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Scn5aQ9JJV9 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Scn5aQ9JJV9 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Scn5aQ9JJV9 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 Gm10252-201ENSMUST00000209541 832 ntBASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
Scn5aQ9JJV9 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 AA386476-201ENSMUST00000098781 1665 ntBASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn5aQ9JJV9 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.3■□□□□ 0.84
Scn5aQ9JJV9 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn5aQ9JJV9 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn5aQ9JJV9 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn5aQ9JJV9 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Scn5aQ9JJV9 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Scn5aQ9JJV9 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Scn5aQ9JJV9 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn5aQ9JJV9 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn5aQ9JJV9 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Scn5aQ9JJV9 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn5aQ9JJV9 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Scn5aQ9JJV9 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.29■□□□□ 0.84
Scn5aQ9JJV9 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scn5aQ9JJV9 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Scn5aQ9JJV9 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn5aQ9JJV9 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn5aQ9JJV9 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn5aQ9JJV9 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Scn5aQ9JJV9 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Scn5aQ9JJV9 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.28■□□□□ 0.84
Scn5aQ9JJV9 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn5aQ9JJV9 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scn5aQ9JJV9 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Scn5aQ9JJV9 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Scn5aQ9JJV9 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Scn5aQ9JJV9 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Scn5aQ9JJV9 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC20.27■□□□□ 0.84
Scn5aQ9JJV9 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Scn5aQ9JJV9 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Scn5aQ9JJV9 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn5aQ9JJV9 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn5aQ9JJV9 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn5aQ9JJV9 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn5aQ9JJV9 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn5aQ9JJV9 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scn5aQ9JJV9 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC20.27■□□□□ 0.83
Scn5aQ9JJV9 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Scn5aQ9JJV9 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn5aQ9JJV9 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn5aQ9JJV9 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn5aQ9JJV9 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn5aQ9JJV9 Mir7071-201ENSMUST00000184847 69 ntBASIC20.26■□□□□ 0.83
Scn5aQ9JJV9 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Scn5aQ9JJV9 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn5aQ9JJV9 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
Scn5aQ9JJV9 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Scn5aQ9JJV9 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scn5aQ9JJV9 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn5aQ9JJV9 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Scn5aQ9JJV9 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn5aQ9JJV9 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn5aQ9JJV9 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms