Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lima1Q9ERG0 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lima1Q9ERG0 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lima1Q9ERG0 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lima1Q9ERG0 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lima1Q9ERG0 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lima1Q9ERG0 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC19.13■□□□□ 0.65
Lima1Q9ERG0 Rps24-207ENSMUST00000224568 714 ntBASIC19.13■□□□□ 0.65
Lima1Q9ERG0 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
Lima1Q9ERG0 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC19.13■□□□□ 0.65
Lima1Q9ERG0 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lima1Q9ERG0 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Lima1Q9ERG0 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lima1Q9ERG0 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Lima1Q9ERG0 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lima1Q9ERG0 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Lima1Q9ERG0 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lima1Q9ERG0 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC19.12■□□□□ 0.65
Lima1Q9ERG0 Gm14117-201ENSMUST00000122417 843 ntBASIC19.12■□□□□ 0.65
Lima1Q9ERG0 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lima1Q9ERG0 Gm9870-201ENSMUST00000063874 645 ntBASIC19.12■□□□□ 0.65
Lima1Q9ERG0 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lima1Q9ERG0 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Lima1Q9ERG0 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Lima1Q9ERG0 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lima1Q9ERG0 Cdkn3-203ENSMUST00000227149 1952 ntBASIC19.12■□□□□ 0.65
Lima1Q9ERG0 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Lima1Q9ERG0 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lima1Q9ERG0 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Lima1Q9ERG0 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lima1Q9ERG0 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Lima1Q9ERG0 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC19.11■□□□□ 0.65
Lima1Q9ERG0 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC19.11■□□□□ 0.65
Lima1Q9ERG0 Gm22238-201ENSMUST00000175222 88 ntBASIC19.11■□□□□ 0.65
Lima1Q9ERG0 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC19.11■□□□□ 0.65
Lima1Q9ERG0 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lima1Q9ERG0 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lima1Q9ERG0 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Lima1Q9ERG0 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lima1Q9ERG0 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lima1Q9ERG0 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lima1Q9ERG0 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lima1Q9ERG0 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Lima1Q9ERG0 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lima1Q9ERG0 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lima1Q9ERG0 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lima1Q9ERG0 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC19.1■□□□□ 0.65
Lima1Q9ERG0 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Lima1Q9ERG0 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
Lima1Q9ERG0 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lima1Q9ERG0 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lima1Q9ERG0 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Lima1Q9ERG0 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Lima1Q9ERG0 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lima1Q9ERG0 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Lima1Q9ERG0 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.09■□□□□ 0.65
Lima1Q9ERG0 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lima1Q9ERG0 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Lima1Q9ERG0 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lima1Q9ERG0 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lima1Q9ERG0 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC19.09■□□□□ 0.65
Lima1Q9ERG0 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC19.09■□□□□ 0.65
Lima1Q9ERG0 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lima1Q9ERG0 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lima1Q9ERG0 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Lima1Q9ERG0 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.09■□□□□ 0.65
Lima1Q9ERG0 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Lima1Q9ERG0 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Lima1Q9ERG0 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Lima1Q9ERG0 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Lima1Q9ERG0 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Lima1Q9ERG0 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Lima1Q9ERG0 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC19.08■□□□□ 0.64
Lima1Q9ERG0 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Lima1Q9ERG0 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Lima1Q9ERG0 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
Lima1Q9ERG0 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Lima1Q9ERG0 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Lima1Q9ERG0 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lima1Q9ERG0 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lima1Q9ERG0 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lima1Q9ERG0 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Lima1Q9ERG0 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
Lima1Q9ERG0 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC19.07■□□□□ 0.64
Lima1Q9ERG0 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lima1Q9ERG0 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
Lima1Q9ERG0 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lima1Q9ERG0 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lima1Q9ERG0 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Lima1Q9ERG0 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lima1Q9ERG0 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lima1Q9ERG0 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lima1Q9ERG0 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lima1Q9ERG0 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lima1Q9ERG0 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Lima1Q9ERG0 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lima1Q9ERG0 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lima1Q9ERG0 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lima1Q9ERG0 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lima1Q9ERG0 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms