Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Gm9988-201ENSMUST00000069786 435 ntBASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Cpsf1Q9EPU4 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC27.2■■□□□ 1.95
Cpsf1Q9EPU4 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
Cpsf1Q9EPU4 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
Cpsf1Q9EPU4 Gm38205-201ENSMUST00000192243 258 ntBASIC27.2■■□□□ 1.94
Cpsf1Q9EPU4 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC27.2■■□□□ 1.94
Cpsf1Q9EPU4 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.94
Cpsf1Q9EPU4 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
Cpsf1Q9EPU4 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
Cpsf1Q9EPU4 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Cpsf1Q9EPU4 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Cpsf1Q9EPU4 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC27.19■■□□□ 1.94
Cpsf1Q9EPU4 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
Cpsf1Q9EPU4 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC27.19■■□□□ 1.94
Cpsf1Q9EPU4 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
Cpsf1Q9EPU4 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC27.18■■□□□ 1.94
Cpsf1Q9EPU4 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
Cpsf1Q9EPU4 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC27.18■■□□□ 1.94
Cpsf1Q9EPU4 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Cpsf1Q9EPU4 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC27.18■■□□□ 1.94
Cpsf1Q9EPU4 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
Cpsf1Q9EPU4 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Cpsf1Q9EPU4 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
Cpsf1Q9EPU4 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Cpsf1Q9EPU4 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Cpsf1Q9EPU4 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
Cpsf1Q9EPU4 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
Cpsf1Q9EPU4 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC27.17■■□□□ 1.94
Cpsf1Q9EPU4 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
Cpsf1Q9EPU4 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
Cpsf1Q9EPU4 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Cpsf1Q9EPU4 Gm12933-201ENSMUST00000120203 872 ntBASIC27.16■■□□□ 1.94
Cpsf1Q9EPU4 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
Cpsf1Q9EPU4 Gm42778-201ENSMUST00000199644 553 ntBASIC27.16■■□□□ 1.94
Cpsf1Q9EPU4 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
Cpsf1Q9EPU4 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Cpsf1Q9EPU4 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC27.16■■□□□ 1.94
Cpsf1Q9EPU4 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC27.16■■□□□ 1.94
Cpsf1Q9EPU4 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Cpsf1Q9EPU4 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Cpsf1Q9EPU4 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
Cpsf1Q9EPU4 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC27.15■■□□□ 1.94
Cpsf1Q9EPU4 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
Cpsf1Q9EPU4 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Cpsf1Q9EPU4 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC27.15■■□□□ 1.94
Cpsf1Q9EPU4 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
Cpsf1Q9EPU4 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC27.15■■□□□ 1.94
Cpsf1Q9EPU4 Ap3s1-204ENSMUST00000225520 957 ntBASIC27.15■■□□□ 1.94
Cpsf1Q9EPU4 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC27.15■■□□□ 1.94
Cpsf1Q9EPU4 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
Cpsf1Q9EPU4 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.94
Cpsf1Q9EPU4 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC27.14■■□□□ 1.93
Cpsf1Q9EPU4 Gm32699-201ENSMUST00000221728 1988 ntBASIC27.14■■□□□ 1.93
Cpsf1Q9EPU4 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Cpsf1Q9EPU4 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Cpsf1Q9EPU4 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Cpsf1Q9EPU4 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC27.13■■□□□ 1.93
Cpsf1Q9EPU4 Gm7860-201ENSMUST00000121190 879 ntBASIC27.13■■□□□ 1.93
Cpsf1Q9EPU4 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Cpsf1Q9EPU4 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC27.13■■□□□ 1.93
Cpsf1Q9EPU4 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Cpsf1Q9EPU4 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC27.13■■□□□ 1.93
Cpsf1Q9EPU4 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Cpsf1Q9EPU4 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Cpsf1Q9EPU4 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
Cpsf1Q9EPU4 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC27.12■■□□□ 1.93
Cpsf1Q9EPU4 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC27.12■■□□□ 1.93
Cpsf1Q9EPU4 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC27.12■■□□□ 1.93
Cpsf1Q9EPU4 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
Cpsf1Q9EPU4 Gm34220-201ENSMUST00000223001 2709 ntBASIC27.12■■□□□ 1.93
Cpsf1Q9EPU4 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Cpsf1Q9EPU4 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
Cpsf1Q9EPU4 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Cpsf1Q9EPU4 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC27.11■■□□□ 1.93
Cpsf1Q9EPU4 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
Cpsf1Q9EPU4 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC27.11■■□□□ 1.93
Cpsf1Q9EPU4 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Cpsf1Q9EPU4 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Cpsf1Q9EPU4 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC27.1■■□□□ 1.93
Cpsf1Q9EPU4 CT025689.6-201ENSMUST00000224991 1104 ntBASIC27.1■■□□□ 1.93
Cpsf1Q9EPU4 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
Cpsf1Q9EPU4 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Cpsf1Q9EPU4 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Cpsf1Q9EPU4 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC27.09■■□□□ 1.93
Cpsf1Q9EPU4 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC27.09■■□□□ 1.93
Cpsf1Q9EPU4 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC27.09■■□□□ 1.93
Cpsf1Q9EPU4 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC27.09■■□□□ 1.93
Cpsf1Q9EPU4 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Cpsf1Q9EPU4 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC27.09■■□□□ 1.93
Cpsf1Q9EPU4 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.93
Cpsf1Q9EPU4 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC27.08■■□□□ 1.93
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms