Protein–RNA interactions for Protein: Q9CQX5

Cldnd1, Claudin domain-containing protein 1, mousemouse

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldnd1Q9CQX5 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cldnd1Q9CQX5 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cldnd1Q9CQX5 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.06■□□□□ 0.8
Cldnd1Q9CQX5 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cldnd1Q9CQX5 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cldnd1Q9CQX5 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cldnd1Q9CQX5 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cldnd1Q9CQX5 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cldnd1Q9CQX5 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Cldnd1Q9CQX5 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Cldnd1Q9CQX5 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Cldnd1Q9CQX5 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Cldnd1Q9CQX5 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.05■□□□□ 0.8
Cldnd1Q9CQX5 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Cldnd1Q9CQX5 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cldnd1Q9CQX5 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Cldnd1Q9CQX5 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cldnd1Q9CQX5 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Cldnd1Q9CQX5 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cldnd1Q9CQX5 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cldnd1Q9CQX5 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC20.02■□□□□ 0.8
Cldnd1Q9CQX5 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Cldnd1Q9CQX5 AC130671.1-201ENSMUST00000227384 1237 ntBASIC20.02■□□□□ 0.8
Cldnd1Q9CQX5 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cldnd1Q9CQX5 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Cldnd1Q9CQX5 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Cldnd1Q9CQX5 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Cldnd1Q9CQX5 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Cldnd1Q9CQX5 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Cldnd1Q9CQX5 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cldnd1Q9CQX5 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cldnd1Q9CQX5 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cldnd1Q9CQX5 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Cldnd1Q9CQX5 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cldnd1Q9CQX5 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Cldnd1Q9CQX5 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Cldnd1Q9CQX5 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.01■□□□□ 0.79
Cldnd1Q9CQX5 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cldnd1Q9CQX5 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cldnd1Q9CQX5 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cldnd1Q9CQX5 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Cldnd1Q9CQX5 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
Cldnd1Q9CQX5 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cldnd1Q9CQX5 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cldnd1Q9CQX5 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Cldnd1Q9CQX5 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cldnd1Q9CQX5 AC154266.1-201ENSMUST00000223190 503 ntBASIC20■□□□□ 0.79
Cldnd1Q9CQX5 Arhgef33-211ENSMUST00000225658 473 ntBASIC20■□□□□ 0.79
Cldnd1Q9CQX5 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Cldnd1Q9CQX5 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cldnd1Q9CQX5 Gm37563-201ENSMUST00000192580 1513 ntBASIC20■□□□□ 0.79
Cldnd1Q9CQX5 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Cldnd1Q9CQX5 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 Gm12896-201ENSMUST00000118430 226 ntBASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cldnd1Q9CQX5 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cldnd1Q9CQX5 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cldnd1Q9CQX5 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cldnd1Q9CQX5 Gm6576-201ENSMUST00000169678 883 ntBASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms