Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rpa1Q8VEE4 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.52■□□□□ 0.72
Rpa1Q8VEE4 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rpa1Q8VEE4 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rpa1Q8VEE4 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.52■□□□□ 0.72
Rpa1Q8VEE4 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Rpa1Q8VEE4 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Rpa1Q8VEE4 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Rpa1Q8VEE4 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
Rpa1Q8VEE4 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Rpa1Q8VEE4 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Rpa1Q8VEE4 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC19.52■□□□□ 0.71
Rpa1Q8VEE4 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Gm7143-201ENSMUST00000222811 859 ntBASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Rpa1Q8VEE4 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Gm10399-202ENSMUST00000202768 748 ntBASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.5■□□□□ 0.71
Rpa1Q8VEE4 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Gm42900-201ENSMUST00000197184 2167 ntBASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Gm5921-201ENSMUST00000075898 882 ntBASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rpa1Q8VEE4 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rpa1Q8VEE4 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Rpa1Q8VEE4 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.47■□□□□ 0.71
Rpa1Q8VEE4 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rpa1Q8VEE4 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rpa1Q8VEE4 Mir6236-201ENSMUST00000184437 123 ntBASIC19.47■□□□□ 0.71
Rpa1Q8VEE4 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rpa1Q8VEE4 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Rpa1Q8VEE4 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rpa1Q8VEE4 Gm35558-201ENSMUST00000222675 2219 ntBASIC19.47■□□□□ 0.71
Rpa1Q8VEE4 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rpa1Q8VEE4 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Gm45444-201ENSMUST00000211394 898 ntBASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rpa1Q8VEE4 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms