Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Col11a1Q61245 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Col11a1Q61245 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Col11a1Q61245 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Col11a1Q61245 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Col11a1Q61245 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC22.23■■□□□ 1.15
Col11a1Q61245 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Col11a1Q61245 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Col11a1Q61245 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Col11a1Q61245 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
Col11a1Q61245 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Col11a1Q61245 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC22.22■■□□□ 1.15
Col11a1Q61245 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Col11a1Q61245 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Col11a1Q61245 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
Col11a1Q61245 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Col11a1Q61245 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Col11a1Q61245 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Col11a1Q61245 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
Col11a1Q61245 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Col11a1Q61245 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Col11a1Q61245 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Col11a1Q61245 AC131586.2-201ENSMUST00000228370 1512 ntBASIC22.21■■□□□ 1.15
Col11a1Q61245 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Col11a1Q61245 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Col11a1Q61245 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC22.2■■□□□ 1.14
Col11a1Q61245 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC22.2■■□□□ 1.14
Col11a1Q61245 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col11a1Q61245 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Col11a1Q61245 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col11a1Q61245 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col11a1Q61245 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
Col11a1Q61245 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
Col11a1Q61245 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col11a1Q61245 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col11a1Q61245 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col11a1Q61245 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col11a1Q61245 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col11a1Q61245 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Col11a1Q61245 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Col11a1Q61245 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Col11a1Q61245 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col11a1Q61245 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Col11a1Q61245 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC22.18■■□□□ 1.14
Col11a1Q61245 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
Col11a1Q61245 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC22.18■■□□□ 1.14
Col11a1Q61245 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC22.18■■□□□ 1.14
Col11a1Q61245 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col11a1Q61245 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col11a1Q61245 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
Col11a1Q61245 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
Col11a1Q61245 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col11a1Q61245 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col11a1Q61245 Gm12896-201ENSMUST00000118430 226 ntBASIC22.17■■□□□ 1.14
Col11a1Q61245 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col11a1Q61245 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col11a1Q61245 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Col11a1Q61245 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC22.17■■□□□ 1.14
Col11a1Q61245 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
Col11a1Q61245 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col11a1Q61245 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC22.16■■□□□ 1.14
Col11a1Q61245 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC22.16■■□□□ 1.14
Col11a1Q61245 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col11a1Q61245 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Col11a1Q61245 Gm7860-201ENSMUST00000121190 879 ntBASIC22.16■■□□□ 1.14
Col11a1Q61245 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC22.15■■□□□ 1.14
Col11a1Q61245 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Col11a1Q61245 Gm21596-201ENSMUST00000178049 1316 ntBASIC22.15■■□□□ 1.14
Col11a1Q61245 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Col11a1Q61245 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Col11a1Q61245 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC22.15■■□□□ 1.14
Col11a1Q61245 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Col11a1Q61245 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Col11a1Q61245 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC22.14■■□□□ 1.13
Col11a1Q61245 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
Col11a1Q61245 Krtap5-1-202ENSMUST00000188274 742 ntBASIC22.14■■□□□ 1.13
Col11a1Q61245 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
Col11a1Q61245 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC22.14■■□□□ 1.13
Col11a1Q61245 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Col11a1Q61245 Gm13509-201ENSMUST00000119733 1308 ntBASIC22.14■■□□□ 1.13
Col11a1Q61245 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Col11a1Q61245 Gm43909-201ENSMUST00000203443 1876 ntBASIC22.13■■□□□ 1.13
Col11a1Q61245 Gm26766-202ENSMUST00000227544 2347 ntBASIC22.13■■□□□ 1.13
Col11a1Q61245 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Col11a1Q61245 Gm6576-201ENSMUST00000169678 883 ntBASIC22.13■■□□□ 1.13
Col11a1Q61245 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC22.13■■□□□ 1.13
Col11a1Q61245 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Col11a1Q61245 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC22.13■■□□□ 1.13
Col11a1Q61245 Dio3-201ENSMUST00000097228 1449 ntBASIC22.12■■□□□ 1.13
Col11a1Q61245 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Col11a1Q61245 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Col11a1Q61245 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Col11a1Q61245 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC22.12■■□□□ 1.13
Col11a1Q61245 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Col11a1Q61245 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
Col11a1Q61245 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
Col11a1Q61245 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
Col11a1Q61245 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Col11a1Q61245 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Col11a1Q61245 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms