Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Gm37415-201ENSMUST00000192265 2054 ntBASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Gm2559-201ENSMUST00000201323 363 ntBASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Mir1199-201ENSMUST00000117015 119 ntBASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col27a1Q5QNQ9 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col27a1Q5QNQ9 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col27a1Q5QNQ9 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col27a1Q5QNQ9 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col27a1Q5QNQ9 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col27a1Q5QNQ9 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.17■□□□□ 0.66
Col27a1Q5QNQ9 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col27a1Q5QNQ9 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col27a1Q5QNQ9 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col27a1Q5QNQ9 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col27a1Q5QNQ9 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col27a1Q5QNQ9 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col27a1Q5QNQ9 AC121577.1-201ENSMUST00000227302 707 ntBASIC19.16■□□□□ 0.66
Col27a1Q5QNQ9 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col27a1Q5QNQ9 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col27a1Q5QNQ9 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col27a1Q5QNQ9 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col27a1Q5QNQ9 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col27a1Q5QNQ9 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col27a1Q5QNQ9 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Col27a1Q5QNQ9 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col27a1Q5QNQ9 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Col27a1Q5QNQ9 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col27a1Q5QNQ9 AC154649.1-201ENSMUST00000227392 384 ntBASIC19.16■□□□□ 0.66
Col27a1Q5QNQ9 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Col27a1Q5QNQ9 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC19.15■□□□□ 0.66
Col27a1Q5QNQ9 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col27a1Q5QNQ9 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Col27a1Q5QNQ9 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC19.15■□□□□ 0.66
Col27a1Q5QNQ9 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col27a1Q5QNQ9 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC19.15■□□□□ 0.66
Col27a1Q5QNQ9 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.15■□□□□ 0.66
Col27a1Q5QNQ9 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col27a1Q5QNQ9 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col27a1Q5QNQ9 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col27a1Q5QNQ9 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col27a1Q5QNQ9 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col27a1Q5QNQ9 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col27a1Q5QNQ9 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col27a1Q5QNQ9 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
Col27a1Q5QNQ9 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col27a1Q5QNQ9 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Col27a1Q5QNQ9 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC19.14■□□□□ 0.65
Col27a1Q5QNQ9 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col27a1Q5QNQ9 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
Col27a1Q5QNQ9 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19.14■□□□□ 0.65
Col27a1Q5QNQ9 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.14■□□□□ 0.65
Col27a1Q5QNQ9 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col27a1Q5QNQ9 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Col27a1Q5QNQ9 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col27a1Q5QNQ9 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col27a1Q5QNQ9 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC19.12■□□□□ 0.65
Col27a1Q5QNQ9 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.12■□□□□ 0.65
Col27a1Q5QNQ9 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col27a1Q5QNQ9 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col27a1Q5QNQ9 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col27a1Q5QNQ9 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col27a1Q5QNQ9 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col27a1Q5QNQ9 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Col27a1Q5QNQ9 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC19.11■□□□□ 0.65
Col27a1Q5QNQ9 Mir5122-201ENSMUST00000175004 89 ntBASIC19.11■□□□□ 0.65
Col27a1Q5QNQ9 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Col27a1Q5QNQ9 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col27a1Q5QNQ9 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col27a1Q5QNQ9 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col27a1Q5QNQ9 Gm7860-201ENSMUST00000121190 879 ntBASIC19.11■□□□□ 0.65
Col27a1Q5QNQ9 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC19.11■□□□□ 0.65
Col27a1Q5QNQ9 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col27a1Q5QNQ9 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col27a1Q5QNQ9 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col27a1Q5QNQ9 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col27a1Q5QNQ9 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Col27a1Q5QNQ9 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Col27a1Q5QNQ9 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 59.8 ms