Protein–RNA interactions for Protein: Q4FZC9

Syne3, Nesprin-3, mousemouse

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne3Q4FZC9 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Syne3Q4FZC9 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Syne3Q4FZC9 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Syne3Q4FZC9 Gm45417-201ENSMUST00000209533 758 ntBASIC20.6■□□□□ 0.89
Syne3Q4FZC9 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Syne3Q4FZC9 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Syne3Q4FZC9 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.6■□□□□ 0.89
Syne3Q4FZC9 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Syne3Q4FZC9 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Syne3Q4FZC9 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Syne3Q4FZC9 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Syne3Q4FZC9 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.59■□□□□ 0.89
Syne3Q4FZC9 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Syne3Q4FZC9 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Syne3Q4FZC9 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Syne3Q4FZC9 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Syne3Q4FZC9 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Syne3Q4FZC9 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.58■□□□□ 0.89
Syne3Q4FZC9 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Syne3Q4FZC9 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.58■□□□□ 0.89
Syne3Q4FZC9 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Syne3Q4FZC9 Mir7075-201ENSMUST00000184187 82 ntBASIC20.58■□□□□ 0.89
Syne3Q4FZC9 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Syne3Q4FZC9 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Syne3Q4FZC9 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Syne3Q4FZC9 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Syne3Q4FZC9 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Syne3Q4FZC9 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Syne3Q4FZC9 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Syne3Q4FZC9 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Syne3Q4FZC9 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Syne3Q4FZC9 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Syne3Q4FZC9 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Syne3Q4FZC9 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Syne3Q4FZC9 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Syne3Q4FZC9 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Syne3Q4FZC9 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Syne3Q4FZC9 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Syne3Q4FZC9 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Syne3Q4FZC9 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.56■□□□□ 0.88
Syne3Q4FZC9 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Syne3Q4FZC9 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Syne3Q4FZC9 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
Syne3Q4FZC9 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Syne3Q4FZC9 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Syne3Q4FZC9 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Syne3Q4FZC9 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Syne3Q4FZC9 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
Syne3Q4FZC9 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Syne3Q4FZC9 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Syne3Q4FZC9 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Syne3Q4FZC9 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.54■□□□□ 0.88
Syne3Q4FZC9 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
Syne3Q4FZC9 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne3Q4FZC9 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Syne3Q4FZC9 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Syne3Q4FZC9 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne3Q4FZC9 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne3Q4FZC9 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne3Q4FZC9 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.53■□□□□ 0.88
Syne3Q4FZC9 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne3Q4FZC9 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne3Q4FZC9 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Syne3Q4FZC9 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Syne3Q4FZC9 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Syne3Q4FZC9 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC20.52■□□□□ 0.88
Syne3Q4FZC9 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Syne3Q4FZC9 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Syne3Q4FZC9 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Syne3Q4FZC9 Spcs1-204ENSMUST00000226782 949 ntBASIC20.52■□□□□ 0.88
Syne3Q4FZC9 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Syne3Q4FZC9 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms