Protein–RNA interactions for Protein: Q3U466

Cln6, Ceroid-lipofuscinosis, neuronal 6, mousemouse

Predictions only

Length 308 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln6Q3U466 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cln6Q3U466 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cln6Q3U466 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cln6Q3U466 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC16.54■□□□□ 0.24
Cln6Q3U466 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cln6Q3U466 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Cln6Q3U466 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Cln6Q3U466 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC16.54■□□□□ 0.24
Cln6Q3U466 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cln6Q3U466 Gm18755-201ENSMUST00000218030 1099 ntBASIC16.54■□□□□ 0.24
Cln6Q3U466 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Cln6Q3U466 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
Cln6Q3U466 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC16.53■□□□□ 0.24
Cln6Q3U466 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Cln6Q3U466 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC16.53■□□□□ 0.24
Cln6Q3U466 Mir6236-201ENSMUST00000184437 123 ntBASIC16.53■□□□□ 0.24
Cln6Q3U466 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cln6Q3U466 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cln6Q3U466 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cln6Q3U466 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cln6Q3U466 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cln6Q3U466 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Cln6Q3U466 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cln6Q3U466 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cln6Q3U466 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cln6Q3U466 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cln6Q3U466 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Cln6Q3U466 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cln6Q3U466 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cln6Q3U466 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cln6Q3U466 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cln6Q3U466 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Cln6Q3U466 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
Cln6Q3U466 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cln6Q3U466 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC16.5■□□□□ 0.23
Cln6Q3U466 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Cln6Q3U466 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC16.5■□□□□ 0.23
Cln6Q3U466 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
Cln6Q3U466 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC16.5■□□□□ 0.23
Cln6Q3U466 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cln6Q3U466 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cln6Q3U466 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cln6Q3U466 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cln6Q3U466 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Cln6Q3U466 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cln6Q3U466 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC16.49■□□□□ 0.23
Cln6Q3U466 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cln6Q3U466 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cln6Q3U466 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cln6Q3U466 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Cln6Q3U466 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cln6Q3U466 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Cln6Q3U466 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cln6Q3U466 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cln6Q3U466 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cln6Q3U466 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cln6Q3U466 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC16.49■□□□□ 0.23
Cln6Q3U466 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cln6Q3U466 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Cln6Q3U466 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cln6Q3U466 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cln6Q3U466 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cln6Q3U466 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Cln6Q3U466 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cln6Q3U466 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cln6Q3U466 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cln6Q3U466 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cln6Q3U466 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC16.47■□□□□ 0.23
Cln6Q3U466 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cln6Q3U466 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
Cln6Q3U466 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms