Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
Col28a1Q2UY11 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Col28a1Q2UY11 AC140930.3-201ENSMUST00000222935 274 ntBASIC18.8■□□□□ 0.6
Col28a1Q2UY11 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.8■□□□□ 0.6
Col28a1Q2UY11 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col28a1Q2UY11 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col28a1Q2UY11 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col28a1Q2UY11 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col28a1Q2UY11 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col28a1Q2UY11 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col28a1Q2UY11 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col28a1Q2UY11 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Col28a1Q2UY11 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col28a1Q2UY11 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col28a1Q2UY11 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col28a1Q2UY11 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col28a1Q2UY11 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col28a1Q2UY11 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Col28a1Q2UY11 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col28a1Q2UY11 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Col28a1Q2UY11 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col28a1Q2UY11 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Col28a1Q2UY11 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col28a1Q2UY11 Gm12922-201ENSMUST00000120626 809 ntBASIC18.78■□□□□ 0.6
Col28a1Q2UY11 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col28a1Q2UY11 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col28a1Q2UY11 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Col28a1Q2UY11 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Col28a1Q2UY11 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col28a1Q2UY11 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col28a1Q2UY11 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col28a1Q2UY11 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC18.77■□□□□ 0.6
Col28a1Q2UY11 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC18.77■□□□□ 0.6
Col28a1Q2UY11 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.77■□□□□ 0.6
Col28a1Q2UY11 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col28a1Q2UY11 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC18.77■□□□□ 0.6
Col28a1Q2UY11 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col28a1Q2UY11 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col28a1Q2UY11 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col28a1Q2UY11 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
Col28a1Q2UY11 Gm43231-201ENSMUST00000202960 2258 ntBASIC18.76■□□□□ 0.59
Col28a1Q2UY11 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Col28a1Q2UY11 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col28a1Q2UY11 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC18.76■□□□□ 0.59
Col28a1Q2UY11 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC18.76■□□□□ 0.59
Col28a1Q2UY11 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col28a1Q2UY11 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.76■□□□□ 0.59
Col28a1Q2UY11 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col28a1Q2UY11 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Col28a1Q2UY11 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC18.75■□□□□ 0.59
Col28a1Q2UY11 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col28a1Q2UY11 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col28a1Q2UY11 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col28a1Q2UY11 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC18.75■□□□□ 0.59
Col28a1Q2UY11 Gm10399-202ENSMUST00000202768 748 ntBASIC18.75■□□□□ 0.59
Col28a1Q2UY11 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col28a1Q2UY11 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col28a1Q2UY11 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col28a1Q2UY11 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col28a1Q2UY11 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Col28a1Q2UY11 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Gm7143-201ENSMUST00000222811 859 ntBASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col28a1Q2UY11 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col28a1Q2UY11 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col28a1Q2UY11 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
Col28a1Q2UY11 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC18.73■□□□□ 0.59
Col28a1Q2UY11 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC18.73■□□□□ 0.59
Col28a1Q2UY11 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col28a1Q2UY11 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col28a1Q2UY11 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col28a1Q2UY11 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Col28a1Q2UY11 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col28a1Q2UY11 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col28a1Q2UY11 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col28a1Q2UY11 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col28a1Q2UY11 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col28a1Q2UY11 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col28a1Q2UY11 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col28a1Q2UY11 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Col28a1Q2UY11 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.71■□□□□ 0.59
Col28a1Q2UY11 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col28a1Q2UY11 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col28a1Q2UY11 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC18.71■□□□□ 0.59
Col28a1Q2UY11 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms