Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
Ptchd3Q0EEE2 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ptchd3Q0EEE2 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ptchd3Q0EEE2 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Ptchd3Q0EEE2 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ptchd3Q0EEE2 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ptchd3Q0EEE2 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ptchd3Q0EEE2 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ptchd3Q0EEE2 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ptchd3Q0EEE2 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ptchd3Q0EEE2 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ptchd3Q0EEE2 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ptchd3Q0EEE2 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ptchd3Q0EEE2 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ptchd3Q0EEE2 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
Ptchd3Q0EEE2 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ptchd3Q0EEE2 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ptchd3Q0EEE2 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC18.69■□□□□ 0.58
Ptchd3Q0EEE2 Gm45102-201ENSMUST00000207427 857 ntBASIC18.69■□□□□ 0.58
Ptchd3Q0EEE2 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Ptchd3Q0EEE2 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ptchd3Q0EEE2 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ptchd3Q0EEE2 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ptchd3Q0EEE2 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Ptchd3Q0EEE2 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ptchd3Q0EEE2 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ptchd3Q0EEE2 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ptchd3Q0EEE2 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ptchd3Q0EEE2 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Ptchd3Q0EEE2 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ptchd3Q0EEE2 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ptchd3Q0EEE2 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ptchd3Q0EEE2 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Ptchd3Q0EEE2 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Ptchd3Q0EEE2 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Ptchd3Q0EEE2 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ptchd3Q0EEE2 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ptchd3Q0EEE2 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ptchd3Q0EEE2 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ptchd3Q0EEE2 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Ptchd3Q0EEE2 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC18.67■□□□□ 0.58
Ptchd3Q0EEE2 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ptchd3Q0EEE2 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Ptchd3Q0EEE2 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC18.67■□□□□ 0.58
Ptchd3Q0EEE2 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ptchd3Q0EEE2 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Fam105a-203ENSMUST00000226170 3043 ntBASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.66■□□□□ 0.58
Ptchd3Q0EEE2 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ptchd3Q0EEE2 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ptchd3Q0EEE2 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Ptchd3Q0EEE2 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Ptchd3Q0EEE2 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ptchd3Q0EEE2 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC18.65■□□□□ 0.58
Ptchd3Q0EEE2 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.65■□□□□ 0.58
Ptchd3Q0EEE2 Gm7143-201ENSMUST00000222811 859 ntBASIC18.65■□□□□ 0.58
Ptchd3Q0EEE2 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Ptchd3Q0EEE2 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Ptchd3Q0EEE2 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Ptchd3Q0EEE2 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ptchd3Q0EEE2 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC18.64■□□□□ 0.57
Ptchd3Q0EEE2 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Ptchd3Q0EEE2 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC18.64■□□□□ 0.57
Ptchd3Q0EEE2 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Ptchd3Q0EEE2 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC18.64■□□□□ 0.57
Ptchd3Q0EEE2 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ptchd3Q0EEE2 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms