Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Tpm1P58771 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Tpm1P58771 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC21.65■■□□□ 1.06
Tpm1P58771 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Tpm1P58771 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Tpm1P58771 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Tpm1P58771 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC21.65■■□□□ 1.06
Tpm1P58771 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.65■■□□□ 1.06
Tpm1P58771 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC21.65■■□□□ 1.06
Tpm1P58771 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC21.65■■□□□ 1.06
Tpm1P58771 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Tpm1P58771 Gm10232-201ENSMUST00000089221 720 ntBASIC21.65■■□□□ 1.06
Tpm1P58771 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Tpm1P58771 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Tpm1P58771 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Tpm1P58771 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Tpm1P58771 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Tpm1P58771 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Tpm1P58771 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Tpm1P58771 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Tpm1P58771 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC21.64■■□□□ 1.05
Tpm1P58771 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Tpm1P58771 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Tpm1P58771 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Tpm1P58771 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Tpm1P58771 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Tpm1P58771 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
Tpm1P58771 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Tpm1P58771 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Tpm1P58771 Mir6236-201ENSMUST00000184437 123 ntBASIC21.63■■□□□ 1.05
Tpm1P58771 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Tpm1P58771 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Tpm1P58771 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Tpm1P58771 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Tpm1P58771 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Tpm1P58771 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Tpm1P58771 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Tpm1P58771 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Tpm1P58771 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Tpm1P58771 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Tpm1P58771 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Tpm1P58771 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Tpm1P58771 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC21.62■■□□□ 1.05
Tpm1P58771 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
Tpm1P58771 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Tpm1P58771 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Tpm1P58771 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Tpm1P58771 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Tpm1P58771 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Tpm1P58771 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Tpm1P58771 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Tpm1P58771 Gm13238-201ENSMUST00000117655 780 ntBASIC21.61■■□□□ 1.05
Tpm1P58771 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Tpm1P58771 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Tpm1P58771 Gm5921-201ENSMUST00000075898 882 ntBASIC21.61■■□□□ 1.05
Tpm1P58771 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC21.61■■□□□ 1.05
Tpm1P58771 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Tpm1P58771 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Tpm1P58771 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
Tpm1P58771 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Tpm1P58771 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Tpm1P58771 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC21.6■■□□□ 1.05
Tpm1P58771 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Tpm1P58771 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC21.59■■□□□ 1.05
Tpm1P58771 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Tpm1P58771 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Tpm1P58771 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Tpm1P58771 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Tpm1P58771 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Tpm1P58771 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
Tpm1P58771 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.05
Tpm1P58771 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Tpm1P58771 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Tpm1P58771 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Tpm1P58771 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Tpm1P58771 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
Tpm1P58771 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
Tpm1P58771 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC21.58■■□□□ 1.04
Tpm1P58771 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Tpm1P58771 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC21.57■■□□□ 1.04
Tpm1P58771 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Tpm1P58771 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Tpm1P58771 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC21.57■■□□□ 1.04
Tpm1P58771 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Tpm1P58771 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Tpm1P58771 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Tpm1P58771 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Tpm1P58771 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
Tpm1P58771 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
Tpm1P58771 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Tpm1P58771 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
Tpm1P58771 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Tpm1P58771 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Tpm1P58771 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Tpm1P58771 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC21.56■■□□□ 1.04
Tpm1P58771 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
Tpm1P58771 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC21.55■■□□□ 1.04
Tpm1P58771 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Tpm1P58771 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Tpm1P58771 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms