Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx3P48381 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx3P48381 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
Rfx3P48381 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx3P48381 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx3P48381 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx3P48381 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC17.5■□□□□ 0.39
Rfx3P48381 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx3P48381 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC17.5■□□□□ 0.39
Rfx3P48381 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx3P48381 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
Rfx3P48381 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
Rfx3P48381 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx3P48381 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx3P48381 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx3P48381 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx3P48381 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx3P48381 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx3P48381 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC17.49■□□□□ 0.39
Rfx3P48381 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx3P48381 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx3P48381 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx3P48381 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Rfx3P48381 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx3P48381 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx3P48381 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx3P48381 Gm43909-201ENSMUST00000203443 1876 ntBASIC17.48■□□□□ 0.39
Rfx3P48381 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx3P48381 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx3P48381 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx3P48381 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx3P48381 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx3P48381 Gm15039-201ENSMUST00000118914 875 ntBASIC17.48■□□□□ 0.39
Rfx3P48381 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
Rfx3P48381 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC17.48■□□□□ 0.39
Rfx3P48381 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx3P48381 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx3P48381 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx3P48381 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC17.48■□□□□ 0.39
Rfx3P48381 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Rfx3P48381 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx3P48381 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx3P48381 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx3P48381 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx3P48381 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx3P48381 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx3P48381 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx3P48381 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx3P48381 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx3P48381 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC17.47■□□□□ 0.39
Rfx3P48381 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC17.47■□□□□ 0.39
Rfx3P48381 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Rfx3P48381 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx3P48381 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Rfx3P48381 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
Rfx3P48381 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC17.47■□□□□ 0.39
Rfx3P48381 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx3P48381 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx3P48381 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx3P48381 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rfx3P48381 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx3P48381 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Rfx3P48381 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.39
Rfx3P48381 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
Rfx3P48381 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx3P48381 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC17.46■□□□□ 0.39
Rfx3P48381 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC17.46■□□□□ 0.39
Rfx3P48381 Gm43759-201ENSMUST00000196925 1261 ntBASIC17.46■□□□□ 0.39
Rfx3P48381 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Rfx3P48381 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx3P48381 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Rfx3P48381 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx3P48381 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rfx3P48381 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Rfx3P48381 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Rfx3P48381 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Rfx3P48381 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Rfx3P48381 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC17.45■□□□□ 0.38
Rfx3P48381 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Rfx3P48381 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.45■□□□□ 0.38
Rfx3P48381 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rfx3P48381 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC17.44■□□□□ 0.38
Rfx3P48381 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rfx3P48381 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Rfx3P48381 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Rfx3P48381 Gm8770-201ENSMUST00000121113 1109 ntBASIC17.44■□□□□ 0.38
Rfx3P48381 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms