Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cldn1O88551 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cldn1O88551 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Cldn1O88551 Gm20760-201ENSMUST00000179197 648 ntBASIC16.64■□□□□ 0.25
Cldn1O88551 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cldn1O88551 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cldn1O88551 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cldn1O88551 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cldn1O88551 Gm43006-201ENSMUST00000197702 1602 ntBASIC16.63■□□□□ 0.25
Cldn1O88551 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
Cldn1O88551 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Cldn1O88551 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cldn1O88551 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC16.63■□□□□ 0.25
Cldn1O88551 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Cldn1O88551 Gm12527-201ENSMUST00000117967 564 ntBASIC16.63■□□□□ 0.25
Cldn1O88551 Gm22325-201ENSMUST00000158904 308 ntBASIC16.63■□□□□ 0.25
Cldn1O88551 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC16.63■□□□□ 0.25
Cldn1O88551 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cldn1O88551 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Cldn1O88551 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Cldn1O88551 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cldn1O88551 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cldn1O88551 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cldn1O88551 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cldn1O88551 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cldn1O88551 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cldn1O88551 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC16.62■□□□□ 0.25
Cldn1O88551 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cldn1O88551 Mir7071-201ENSMUST00000184847 69 ntBASIC16.62■□□□□ 0.25
Cldn1O88551 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cldn1O88551 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cldn1O88551 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cldn1O88551 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cldn1O88551 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cldn1O88551 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cldn1O88551 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cldn1O88551 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cldn1O88551 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cldn1O88551 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cldn1O88551 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Cldn1O88551 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC16.61■□□□□ 0.25
Cldn1O88551 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC16.61■□□□□ 0.25
Cldn1O88551 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cldn1O88551 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
Cldn1O88551 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cldn1O88551 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cldn1O88551 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cldn1O88551 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Cldn1O88551 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cldn1O88551 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC16.6■□□□□ 0.25
Cldn1O88551 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
Cldn1O88551 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cldn1O88551 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cldn1O88551 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cldn1O88551 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cldn1O88551 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC16.6■□□□□ 0.25
Cldn1O88551 Gm3807-201ENSMUST00000193520 1168 ntBASIC16.6■□□□□ 0.25
Cldn1O88551 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cldn1O88551 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cldn1O88551 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cldn1O88551 Gm8520-201ENSMUST00000186517 868 ntBASIC16.59■□□□□ 0.25
Cldn1O88551 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cldn1O88551 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cldn1O88551 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Cldn1O88551 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cldn1O88551 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC16.59■□□□□ 0.25
Cldn1O88551 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Cldn1O88551 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Cldn1O88551 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
Cldn1O88551 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Cldn1O88551 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Cldn1O88551 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cldn1O88551 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC16.58■□□□□ 0.24
Cldn1O88551 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Cldn1O88551 Gm27801-201ENSMUST00000184174 223 ntBASIC16.58■□□□□ 0.24
Cldn1O88551 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.24
Cldn1O88551 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cldn1O88551 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Cldn1O88551 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cldn1O88551 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cldn1O88551 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cldn1O88551 Gm37415-201ENSMUST00000192265 2054 ntBASIC16.57■□□□□ 0.24
Cldn1O88551 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cldn1O88551 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cldn1O88551 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Cldn1O88551 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Cldn1O88551 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cldn1O88551 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Cldn1O88551 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC16.57■□□□□ 0.24
Cldn1O88551 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC16.57■□□□□ 0.24
Cldn1O88551 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cldn1O88551 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cldn1O88551 Gm42418-201ENSMUST00000182010 1831 ntBASIC16.56■□□□□ 0.24
Cldn1O88551 AC164883.3-201ENSMUST00000227396 1774 ntBASIC16.56■□□□□ 0.24
Cldn1O88551 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Cldn1O88551 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Cldn1O88551 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Cldn1O88551 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Cldn1O88551 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Cldn1O88551 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 12.4 ms