Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm8093-201ENSMUST00000128935 1892 ntBASIC16.14■□□□□ 0.17
Hmgb3O54879 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Hmgb3O54879 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Hmgb3O54879 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC16.13■□□□□ 0.17
Hmgb3O54879 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Hmgb3O54879 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Hmgb3O54879 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Hmgb3O54879 Gm11847-201ENSMUST00000125165 1119 ntBASIC16.13■□□□□ 0.17
Hmgb3O54879 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Hmgb3O54879 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
Hmgb3O54879 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC16.13■□□□□ 0.17
Hmgb3O54879 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
Hmgb3O54879 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Hmgb3O54879 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Hmgb3O54879 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Hmgb3O54879 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Hmgb3O54879 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Hmgb3O54879 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC16.13■□□□□ 0.17
Hmgb3O54879 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb3O54879 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Hmgb3O54879 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb3O54879 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb3O54879 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC16.12■□□□□ 0.17
Hmgb3O54879 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb3O54879 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Hmgb3O54879 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC16.12■□□□□ 0.17
Hmgb3O54879 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb3O54879 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb3O54879 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb3O54879 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb3O54879 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb3O54879 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Hmgb3O54879 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Hmgb3O54879 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb3O54879 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC16.11■□□□□ 0.17
Hmgb3O54879 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb3O54879 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Hmgb3O54879 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb3O54879 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb3O54879 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb3O54879 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb3O54879 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.11■□□□□ 0.17
Hmgb3O54879 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Hmgb3O54879 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb3O54879 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb3O54879 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb3O54879 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb3O54879 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC16.11■□□□□ 0.17
Hmgb3O54879 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC16.1■□□□□ 0.17
Hmgb3O54879 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Gm43909-201ENSMUST00000203443 1876 ntBASIC16.1■□□□□ 0.17
Hmgb3O54879 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb3O54879 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Hmgb3O54879 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb3O54879 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC16.09■□□□□ 0.17
Hmgb3O54879 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb3O54879 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb3O54879 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb3O54879 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Hmgb3O54879 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb3O54879 Gm28536-201ENSMUST00000190971 1317 ntBASIC16.09■□□□□ 0.17
Hmgb3O54879 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Hmgb3O54879 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Hmgb3O54879 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Hmgb3O54879 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb3O54879 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
Hmgb3O54879 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC16.08■□□□□ 0.17
Hmgb3O54879 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Hmgb3O54879 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb3O54879 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb3O54879 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb3O54879 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb3O54879 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb3O54879 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb3O54879 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
Hmgb3O54879 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb3O54879 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Hmgb3O54879 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb3O54879 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb3O54879 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC16.08■□□□□ 0.16
Hmgb3O54879 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Hmgb3O54879 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Hmgb3O54879 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC16.07■□□□□ 0.16
Hmgb3O54879 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms