Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
Ube4aE9Q735 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
Ube4aE9Q735 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
Ube4aE9Q735 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Ube4aE9Q735 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC23.58■■□□□ 1.37
Ube4aE9Q735 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC23.58■■□□□ 1.37
Ube4aE9Q735 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC23.58■■□□□ 1.36
Ube4aE9Q735 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC23.58■■□□□ 1.36
Ube4aE9Q735 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Ube4aE9Q735 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ube4aE9Q735 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ube4aE9Q735 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC23.57■■□□□ 1.36
Ube4aE9Q735 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC23.57■■□□□ 1.36
Ube4aE9Q735 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC23.57■■□□□ 1.36
Ube4aE9Q735 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Ube4aE9Q735 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
Ube4aE9Q735 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
Ube4aE9Q735 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC23.56■■□□□ 1.36
Ube4aE9Q735 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
Ube4aE9Q735 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Ube4aE9Q735 Gm10655-201ENSMUST00000098658 1397 ntBASIC23.55■■□□□ 1.36
Ube4aE9Q735 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC23.55■■□□□ 1.36
Ube4aE9Q735 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Ube4aE9Q735 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Ube4aE9Q735 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Ube4aE9Q735 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Ube4aE9Q735 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Ube4aE9Q735 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC23.54■■□□□ 1.36
Ube4aE9Q735 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Ube4aE9Q735 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC23.54■■□□□ 1.36
Ube4aE9Q735 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Ube4aE9Q735 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC23.54■■□□□ 1.36
Ube4aE9Q735 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC23.54■■□□□ 1.36
Ube4aE9Q735 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
Ube4aE9Q735 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Ube4aE9Q735 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Ube4aE9Q735 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Ube4aE9Q735 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Ube4aE9Q735 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Ube4aE9Q735 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Ube4aE9Q735 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Ube4aE9Q735 Gm7290-201ENSMUST00000104990 617 ntBASIC23.52■■□□□ 1.36
Ube4aE9Q735 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Ube4aE9Q735 Gm12918-201ENSMUST00000120234 636 ntBASIC23.52■■□□□ 1.36
Ube4aE9Q735 Gm15710-201ENSMUST00000121821 636 ntBASIC23.52■■□□□ 1.36
Ube4aE9Q735 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Ube4aE9Q735 Gm6420-201ENSMUST00000193885 723 ntBASIC23.52■■□□□ 1.36
Ube4aE9Q735 Gm5075-201ENSMUST00000196916 622 ntBASIC23.52■■□□□ 1.36
Ube4aE9Q735 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC23.52■■□□□ 1.36
Ube4aE9Q735 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC23.52■■□□□ 1.36
Ube4aE9Q735 Gm6802-201ENSMUST00000167843 1983 ntBASIC23.52■■□□□ 1.36
Ube4aE9Q735 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Ube4aE9Q735 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC23.51■■□□□ 1.35
Ube4aE9Q735 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Ube4aE9Q735 Gm12441-201ENSMUST00000121806 588 ntBASIC23.51■■□□□ 1.35
Ube4aE9Q735 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
Ube4aE9Q735 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC23.51■■□□□ 1.35
Ube4aE9Q735 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC23.51■■□□□ 1.35
Ube4aE9Q735 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Ube4aE9Q735 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
Ube4aE9Q735 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Ube4aE9Q735 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
Ube4aE9Q735 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Ube4aE9Q735 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC23.5■■□□□ 1.35
Ube4aE9Q735 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC23.5■■□□□ 1.35
Ube4aE9Q735 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Ube4aE9Q735 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC23.49■■□□□ 1.35
Ube4aE9Q735 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ube4aE9Q735 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ube4aE9Q735 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ube4aE9Q735 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC23.49■■□□□ 1.35
Ube4aE9Q735 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC23.49■■□□□ 1.35
Ube4aE9Q735 Gm7860-201ENSMUST00000121190 879 ntBASIC23.49■■□□□ 1.35
Ube4aE9Q735 Gm6365-201ENSMUST00000054711 744 ntBASIC23.49■■□□□ 1.35
Ube4aE9Q735 Gm4968-201ENSMUST00000071458 858 ntBASIC23.49■■□□□ 1.35
Ube4aE9Q735 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ube4aE9Q735 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ube4aE9Q735 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC23.49■■□□□ 1.35
Ube4aE9Q735 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ube4aE9Q735 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ube4aE9Q735 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ube4aE9Q735 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
Ube4aE9Q735 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC23.48■■□□□ 1.35
Ube4aE9Q735 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
Ube4aE9Q735 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Ube4aE9Q735 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Ube4aE9Q735 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Ube4aE9Q735 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Ube4aE9Q735 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Ube4aE9Q735 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
Ube4aE9Q735 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Ube4aE9Q735 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Ube4aE9Q735 Gm13148-201ENSMUST00000118892 745 ntBASIC23.47■■□□□ 1.35
Ube4aE9Q735 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC23.47■■□□□ 1.35
Ube4aE9Q735 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC23.47■■□□□ 1.35
Ube4aE9Q735 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC23.47■■□□□ 1.35
Ube4aE9Q735 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Ube4aE9Q735 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Ube4aE9Q735 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
Ube4aE9Q735 Nespas-201ENSMUST00000143738 1083 ntBASIC23.46■■□□□ 1.35
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms