Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Chd3B1AR17 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Chd3B1AR17 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Chd3B1AR17 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chd3B1AR17 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chd3B1AR17 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC19.16■□□□□ 0.66
Chd3B1AR17 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chd3B1AR17 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chd3B1AR17 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chd3B1AR17 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC19.16■□□□□ 0.66
Chd3B1AR17 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Chd3B1AR17 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Chd3B1AR17 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chd3B1AR17 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chd3B1AR17 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC19.16■□□□□ 0.66
Chd3B1AR17 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Chd3B1AR17 Gm20100-201ENSMUST00000209418 2272 ntBASIC19.16■□□□□ 0.66
Chd3B1AR17 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Chd3B1AR17 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Chd3B1AR17 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Chd3B1AR17 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC19.15■□□□□ 0.66
Chd3B1AR17 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Chd3B1AR17 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC19.15■□□□□ 0.66
Chd3B1AR17 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Chd3B1AR17 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Chd3B1AR17 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Chd3B1AR17 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Chd3B1AR17 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Chd3B1AR17 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Chd3B1AR17 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC19.14■□□□□ 0.66
Chd3B1AR17 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Chd3B1AR17 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Chd3B1AR17 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Chd3B1AR17 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
Chd3B1AR17 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Chd3B1AR17 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Chd3B1AR17 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Chd3B1AR17 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Chd3B1AR17 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Chd3B1AR17 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Chd3B1AR17 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC19.13■□□□□ 0.65
Chd3B1AR17 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Chd3B1AR17 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC19.13■□□□□ 0.65
Chd3B1AR17 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Chd3B1AR17 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Chd3B1AR17 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.12■□□□□ 0.65
Chd3B1AR17 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Chd3B1AR17 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Chd3B1AR17 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Chd3B1AR17 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Chd3B1AR17 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Chd3B1AR17 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Chd3B1AR17 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Chd3B1AR17 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Chd3B1AR17 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Chd3B1AR17 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC19.12■□□□□ 0.65
Chd3B1AR17 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Chd3B1AR17 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Chd3B1AR17 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Chd3B1AR17 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Chd3B1AR17 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC19.11■□□□□ 0.65
Chd3B1AR17 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Chd3B1AR17 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Chd3B1AR17 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Chd3B1AR17 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Chd3B1AR17 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Chd3B1AR17 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Chd3B1AR17 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Chd3B1AR17 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Chd3B1AR17 Gm18671-201ENSMUST00000214826 683 ntBASIC19.1■□□□□ 0.65
Chd3B1AR17 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Chd3B1AR17 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Chd3B1AR17 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Chd3B1AR17 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Chd3B1AR17 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
Chd3B1AR17 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC19.09■□□□□ 0.65
Chd3B1AR17 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Chd3B1AR17 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC19.09■□□□□ 0.65
Chd3B1AR17 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC19.09■□□□□ 0.65
Chd3B1AR17 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Chd3B1AR17 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Chd3B1AR17 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Chd3B1AR17 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Chd3B1AR17 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Chd3B1AR17 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.08■□□□□ 0.64
Chd3B1AR17 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC19.08■□□□□ 0.64
Chd3B1AR17 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Chd3B1AR17 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Chd3B1AR17 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
Chd3B1AR17 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Chd3B1AR17 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Chd3B1AR17 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC19.07■□□□□ 0.64
Chd3B1AR17 Gm13148-201ENSMUST00000118892 745 ntBASIC19.07■□□□□ 0.64
Chd3B1AR17 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Chd3B1AR17 Gm20634-201ENSMUST00000090779 2956 ntBASIC19.07■□□□□ 0.64
Chd3B1AR17 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Chd3B1AR17 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Chd3B1AR17 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Chd3B1AR17 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Chd3B1AR17 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms