Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Chd6A3KFM7 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
Chd6A3KFM7 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Chd6A3KFM7 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Chd6A3KFM7 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC16.08■□□□□ 0.16
Chd6A3KFM7 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Chd6A3KFM7 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Chd6A3KFM7 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Chd6A3KFM7 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd6A3KFM7 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd6A3KFM7 Gm9103-201ENSMUST00000119371 405 ntBASIC16.07■□□□□ 0.16
Chd6A3KFM7 Gm2559-201ENSMUST00000201323 363 ntBASIC16.07■□□□□ 0.16
Chd6A3KFM7 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd6A3KFM7 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Chd6A3KFM7 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd6A3KFM7 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Chd6A3KFM7 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC16.07■□□□□ 0.16
Chd6A3KFM7 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd6A3KFM7 Il17rd-202ENSMUST00000223942 2186 ntBASIC16.07■□□□□ 0.16
Chd6A3KFM7 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Chd6A3KFM7 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Chd6A3KFM7 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd6A3KFM7 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd6A3KFM7 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.06■□□□□ 0.16
Chd6A3KFM7 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Chd6A3KFM7 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd6A3KFM7 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Chd6A3KFM7 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd6A3KFM7 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
Chd6A3KFM7 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Chd6A3KFM7 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Chd6A3KFM7 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
Chd6A3KFM7 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Chd6A3KFM7 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Chd6A3KFM7 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Chd6A3KFM7 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Chd6A3KFM7 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Chd6A3KFM7 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Chd6A3KFM7 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Chd6A3KFM7 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC16.05■□□□□ 0.16
Chd6A3KFM7 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC16.05■□□□□ 0.16
Chd6A3KFM7 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Chd6A3KFM7 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.04■□□□□ 0.16
Chd6A3KFM7 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd6A3KFM7 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chd6A3KFM7 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chd6A3KFM7 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chd6A3KFM7 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd6A3KFM7 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd6A3KFM7 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd6A3KFM7 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Chd6A3KFM7 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Chd6A3KFM7 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chd6A3KFM7 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chd6A3KFM7 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
Chd6A3KFM7 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Chd6A3KFM7 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC16.02■□□□□ 0.15
Chd6A3KFM7 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd6A3KFM7 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd6A3KFM7 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC16.01■□□□□ 0.15
Chd6A3KFM7 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Chd6A3KFM7 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Chd6A3KFM7 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd6A3KFM7 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd6A3KFM7 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC16.01■□□□□ 0.15
Chd6A3KFM7 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd6A3KFM7 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Chd6A3KFM7 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chd6A3KFM7 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC16■□□□□ 0.15
Chd6A3KFM7 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC16■□□□□ 0.15
Chd6A3KFM7 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chd6A3KFM7 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Chd6A3KFM7 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC16■□□□□ 0.15
Chd6A3KFM7 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC16■□□□□ 0.15
Chd6A3KFM7 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chd6A3KFM7 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Chd6A3KFM7 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Chd6A3KFM7 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chd6A3KFM7 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Chd6A3KFM7 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chd6A3KFM7 CT030146.1-201ENSMUST00000220919 217 ntBASIC15.99■□□□□ 0.15
Chd6A3KFM7 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Chd6A3KFM7 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chd6A3KFM7 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC15.98■□□□□ 0.15
Chd6A3KFM7 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chd6A3KFM7 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chd6A3KFM7 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC15.98■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms