Protein–RNA interactions for Protein: Q9Z0Y9

Nr1h3, Oxysterols receptor LXR-alpha, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h3Q9Z0Y9 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
Nr1h3Q9Z0Y9 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h3Q9Z0Y9 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h3Q9Z0Y9 Gm13234-201ENSMUST00000120010 747 ntBASIC21.23■□□□□ 0.99
Nr1h3Q9Z0Y9 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h3Q9Z0Y9 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h3Q9Z0Y9 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC21.23■□□□□ 0.99
Nr1h3Q9Z0Y9 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h3Q9Z0Y9 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h3Q9Z0Y9 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h3Q9Z0Y9 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h3Q9Z0Y9 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h3Q9Z0Y9 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Nr1h3Q9Z0Y9 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nr1h3Q9Z0Y9 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Nr1h3Q9Z0Y9 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nr1h3Q9Z0Y9 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC21.22■□□□□ 0.99
Nr1h3Q9Z0Y9 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
Nr1h3Q9Z0Y9 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Nr1h3Q9Z0Y9 Gm10602-201ENSMUST00000098239 609 ntBASIC21.22■□□□□ 0.99
Nr1h3Q9Z0Y9 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nr1h3Q9Z0Y9 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nr1h3Q9Z0Y9 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC21.21■□□□□ 0.99
Nr1h3Q9Z0Y9 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
Nr1h3Q9Z0Y9 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
Nr1h3Q9Z0Y9 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1h3Q9Z0Y9 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC21.2■□□□□ 0.98
Nr1h3Q9Z0Y9 AC112142.1-201ENSMUST00000228796 918 ntBASIC21.2■□□□□ 0.98
Nr1h3Q9Z0Y9 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1h3Q9Z0Y9 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1h3Q9Z0Y9 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC21.2■□□□□ 0.98
Nr1h3Q9Z0Y9 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1h3Q9Z0Y9 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1h3Q9Z0Y9 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nr1h3Q9Z0Y9 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nr1h3Q9Z0Y9 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nr1h3Q9Z0Y9 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nr1h3Q9Z0Y9 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC21.19■□□□□ 0.98
Nr1h3Q9Z0Y9 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nr1h3Q9Z0Y9 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC21.19■□□□□ 0.98
Nr1h3Q9Z0Y9 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Nr1h3Q9Z0Y9 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nr1h3Q9Z0Y9 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 CT025689.6-201ENSMUST00000224991 1104 ntBASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Nr1h3Q9Z0Y9 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 Reep4-203ENSMUST00000226563 1444 ntBASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Nr1h3Q9Z0Y9 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC21.16■□□□□ 0.98
Nr1h3Q9Z0Y9 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nr1h3Q9Z0Y9 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21.16■□□□□ 0.98
Nr1h3Q9Z0Y9 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC21.16■□□□□ 0.98
Nr1h3Q9Z0Y9 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Nr1h3Q9Z0Y9 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1h3Q9Z0Y9 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1h3Q9Z0Y9 Gm12933-201ENSMUST00000120203 872 ntBASIC21.15■□□□□ 0.98
Nr1h3Q9Z0Y9 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1h3Q9Z0Y9 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nr1h3Q9Z0Y9 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.98
Nr1h3Q9Z0Y9 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Nr1h3Q9Z0Y9 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms