Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim39Q9ESN2 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim39Q9ESN2 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.1■□□□□ 0.49
Trim39Q9ESN2 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim39Q9ESN2 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim39Q9ESN2 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim39Q9ESN2 Gm10657-201ENSMUST00000193528 1031 ntBASIC18.1■□□□□ 0.49
Trim39Q9ESN2 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Trim39Q9ESN2 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim39Q9ESN2 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim39Q9ESN2 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim39Q9ESN2 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Trim39Q9ESN2 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Trim39Q9ESN2 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC18.09■□□□□ 0.49
Trim39Q9ESN2 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Trim39Q9ESN2 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trim39Q9ESN2 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC18.08■□□□□ 0.49
Trim39Q9ESN2 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim39Q9ESN2 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Trim39Q9ESN2 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trim39Q9ESN2 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
Trim39Q9ESN2 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC18.08■□□□□ 0.48
Trim39Q9ESN2 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim39Q9ESN2 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim39Q9ESN2 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim39Q9ESN2 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim39Q9ESN2 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim39Q9ESN2 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim39Q9ESN2 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim39Q9ESN2 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim39Q9ESN2 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trim39Q9ESN2 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
Trim39Q9ESN2 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim39Q9ESN2 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Trim39Q9ESN2 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
Trim39Q9ESN2 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC18.06■□□□□ 0.48
Trim39Q9ESN2 Gm43530-201ENSMUST00000195920 274 ntBASIC18.06■□□□□ 0.48
Trim39Q9ESN2 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trim39Q9ESN2 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim39Q9ESN2 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim39Q9ESN2 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim39Q9ESN2 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim39Q9ESN2 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim39Q9ESN2 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trim39Q9ESN2 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC18.05■□□□□ 0.48
Trim39Q9ESN2 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim39Q9ESN2 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim39Q9ESN2 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim39Q9ESN2 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim39Q9ESN2 AC152827.1-201ENSMUST00000221143 2189 ntBASIC18.05■□□□□ 0.48
Trim39Q9ESN2 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim39Q9ESN2 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms