Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgn3Q9DCB1 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgn3Q9DCB1 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.33■□□□□ 0.53
Hmgn3Q9DCB1 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgn3Q9DCB1 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgn3Q9DCB1 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgn3Q9DCB1 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgn3Q9DCB1 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgn3Q9DCB1 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgn3Q9DCB1 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgn3Q9DCB1 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgn3Q9DCB1 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgn3Q9DCB1 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Hmgn3Q9DCB1 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgn3Q9DCB1 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgn3Q9DCB1 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC18.32■□□□□ 0.52
Hmgn3Q9DCB1 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgn3Q9DCB1 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgn3Q9DCB1 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgn3Q9DCB1 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Hmgn3Q9DCB1 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Hmgn3Q9DCB1 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgn3Q9DCB1 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgn3Q9DCB1 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgn3Q9DCB1 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Gm43592-201ENSMUST00000196922 1165 ntBASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgn3Q9DCB1 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgn3Q9DCB1 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgn3Q9DCB1 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Hmgn3Q9DCB1 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgn3Q9DCB1 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgn3Q9DCB1 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgn3Q9DCB1 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgn3Q9DCB1 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.3■□□□□ 0.52
Hmgn3Q9DCB1 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgn3Q9DCB1 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgn3Q9DCB1 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgn3Q9DCB1 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgn3Q9DCB1 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgn3Q9DCB1 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.29■□□□□ 0.52
Hmgn3Q9DCB1 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgn3Q9DCB1 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgn3Q9DCB1 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgn3Q9DCB1 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgn3Q9DCB1 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Hmgn3Q9DCB1 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgn3Q9DCB1 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC18.28■□□□□ 0.52
Hmgn3Q9DCB1 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgn3Q9DCB1 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgn3Q9DCB1 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgn3Q9DCB1 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.28■□□□□ 0.52
Hmgn3Q9DCB1 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgn3Q9DCB1 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgn3Q9DCB1 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgn3Q9DCB1 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgn3Q9DCB1 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgn3Q9DCB1 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
Hmgn3Q9DCB1 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgn3Q9DCB1 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.27■□□□□ 0.51
Hmgn3Q9DCB1 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Hmgn3Q9DCB1 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Hmgn3Q9DCB1 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Hmgn3Q9DCB1 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Hmgn3Q9DCB1 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Hmgn3Q9DCB1 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC18.26■□□□□ 0.51
Hmgn3Q9DCB1 Gm10420-201ENSMUST00000121713 882 ntBASIC18.26■□□□□ 0.51
Hmgn3Q9DCB1 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC18.26■□□□□ 0.51
Hmgn3Q9DCB1 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC18.26■□□□□ 0.51
Hmgn3Q9DCB1 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Hmgn3Q9DCB1 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgn3Q9DCB1 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.26■□□□□ 0.51
Hmgn3Q9DCB1 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms