Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC21.93■■□□□ 1.1
Ushbp1Q8R370 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
Ushbp1Q8R370 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Ushbp1Q8R370 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Ushbp1Q8R370 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
Ushbp1Q8R370 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
Ushbp1Q8R370 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ushbp1Q8R370 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ushbp1Q8R370 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ushbp1Q8R370 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ushbp1Q8R370 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Ushbp1Q8R370 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.92■■□□□ 1.1
Ushbp1Q8R370 Gm43173-201ENSMUST00000202246 593 ntBASIC21.92■■□□□ 1.1
Ushbp1Q8R370 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC21.92■■□□□ 1.1
Ushbp1Q8R370 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ushbp1Q8R370 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC21.92■■□□□ 1.1
Ushbp1Q8R370 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ushbp1Q8R370 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ushbp1Q8R370 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC21.91■■□□□ 1.1
Ushbp1Q8R370 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ushbp1Q8R370 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ushbp1Q8R370 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC21.91■■□□□ 1.1
Ushbp1Q8R370 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ushbp1Q8R370 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
Ushbp1Q8R370 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC21.91■■□□□ 1.1
Ushbp1Q8R370 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ushbp1Q8R370 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ushbp1Q8R370 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ushbp1Q8R370 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ushbp1Q8R370 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Ushbp1Q8R370 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC21.9■■□□□ 1.1
Ushbp1Q8R370 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ushbp1Q8R370 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ushbp1Q8R370 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Ushbp1Q8R370 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.9■■□□□ 1.1
Ushbp1Q8R370 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ushbp1Q8R370 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
Ushbp1Q8R370 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Ushbp1Q8R370 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC21.89■■□□□ 1.1
Ushbp1Q8R370 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Ushbp1Q8R370 Spcs1-207ENSMUST00000228767 1008 ntBASIC21.89■■□□□ 1.09
Ushbp1Q8R370 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Ushbp1Q8R370 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
Ushbp1Q8R370 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Golph3-202ENSMUST00000226517 2359 ntBASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Gm12251-201ENSMUST00000117893 792 ntBASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Ushbp1Q8R370 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ushbp1Q8R370 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC21.87■■□□□ 1.09
Ushbp1Q8R370 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ushbp1Q8R370 Gm7291-201ENSMUST00000199147 382 ntBASIC21.87■■□□□ 1.09
Ushbp1Q8R370 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ushbp1Q8R370 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
Ushbp1Q8R370 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.87■■□□□ 1.09
Ushbp1Q8R370 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC21.87■■□□□ 1.09
Ushbp1Q8R370 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Ushbp1Q8R370 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.86■■□□□ 1.09
Ushbp1Q8R370 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC21.86■■□□□ 1.09
Ushbp1Q8R370 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ushbp1Q8R370 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ushbp1Q8R370 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ushbp1Q8R370 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ushbp1Q8R370 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ushbp1Q8R370 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC21.86■■□□□ 1.09
Ushbp1Q8R370 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC21.86■■□□□ 1.09
Ushbp1Q8R370 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC21.86■■□□□ 1.09
Ushbp1Q8R370 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Ushbp1Q8R370 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
Ushbp1Q8R370 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ushbp1Q8R370 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Ushbp1Q8R370 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ushbp1Q8R370 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
Ushbp1Q8R370 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Ushbp1Q8R370 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ushbp1Q8R370 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ushbp1Q8R370 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Ushbp1Q8R370 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ushbp1Q8R370 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms