Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm13146-201ENSMUST00000118508 780 ntBASIC27.05■■□□□ 1.92
Usp40Q8BWR4 Gm10602-201ENSMUST00000098239 609 ntBASIC27.05■■□□□ 1.92
Usp40Q8BWR4 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Usp40Q8BWR4 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Usp40Q8BWR4 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Usp40Q8BWR4 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC27.04■■□□□ 1.92
Usp40Q8BWR4 Gm38205-201ENSMUST00000192243 258 ntBASIC27.04■■□□□ 1.92
Usp40Q8BWR4 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
Usp40Q8BWR4 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
Usp40Q8BWR4 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC27.04■■□□□ 1.92
Usp40Q8BWR4 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Usp40Q8BWR4 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
Usp40Q8BWR4 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Usp40Q8BWR4 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC27.03■■□□□ 1.92
Usp40Q8BWR4 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC27.03■■□□□ 1.92
Usp40Q8BWR4 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC27.03■■□□□ 1.92
Usp40Q8BWR4 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
Usp40Q8BWR4 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC27.03■■□□□ 1.92
Usp40Q8BWR4 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC27.03■■□□□ 1.92
Usp40Q8BWR4 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Usp40Q8BWR4 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC27.03■■□□□ 1.92
Usp40Q8BWR4 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
Usp40Q8BWR4 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Usp40Q8BWR4 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Usp40Q8BWR4 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Usp40Q8BWR4 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Usp40Q8BWR4 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
Usp40Q8BWR4 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC27.02■■□□□ 1.92
Usp40Q8BWR4 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
Usp40Q8BWR4 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC27.02■■□□□ 1.92
Usp40Q8BWR4 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
Usp40Q8BWR4 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Usp40Q8BWR4 CT010467.1-202ENSMUST00000205406 714 ntBASIC27.02■■□□□ 1.92
Usp40Q8BWR4 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC27.02■■□□□ 1.92
Usp40Q8BWR4 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Usp40Q8BWR4 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.92
Usp40Q8BWR4 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC27.01■■□□□ 1.92
Usp40Q8BWR4 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Usp40Q8BWR4 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Usp40Q8BWR4 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC27.01■■□□□ 1.91
Usp40Q8BWR4 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Usp40Q8BWR4 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC27.01■■□□□ 1.91
Usp40Q8BWR4 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
Usp40Q8BWR4 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Usp40Q8BWR4 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Usp40Q8BWR4 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC27■■□□□ 1.91
Usp40Q8BWR4 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC27■■□□□ 1.91
Usp40Q8BWR4 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC27■■□□□ 1.91
Usp40Q8BWR4 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Usp40Q8BWR4 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC27■■□□□ 1.91
Usp40Q8BWR4 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC26.99■■□□□ 1.91
Usp40Q8BWR4 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
Usp40Q8BWR4 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
Usp40Q8BWR4 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Usp40Q8BWR4 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC26.99■■□□□ 1.91
Usp40Q8BWR4 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC26.99■■□□□ 1.91
Usp40Q8BWR4 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Usp40Q8BWR4 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Usp40Q8BWR4 Gm27011-201ENSMUST00000182352 972 ntBASIC26.98■■□□□ 1.91
Usp40Q8BWR4 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
Usp40Q8BWR4 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Usp40Q8BWR4 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC26.97■■□□□ 1.91
Usp40Q8BWR4 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC26.97■■□□□ 1.91
Usp40Q8BWR4 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Usp40Q8BWR4 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Usp40Q8BWR4 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC26.96■■□□□ 1.91
Usp40Q8BWR4 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC26.96■■□□□ 1.91
Usp40Q8BWR4 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Usp40Q8BWR4 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
Usp40Q8BWR4 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
Usp40Q8BWR4 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC26.95■■□□□ 1.9
Usp40Q8BWR4 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
Usp40Q8BWR4 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
Usp40Q8BWR4 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
Usp40Q8BWR4 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Usp40Q8BWR4 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
Usp40Q8BWR4 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
Usp40Q8BWR4 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
Usp40Q8BWR4 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Usp40Q8BWR4 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC26.93■■□□□ 1.9
Usp40Q8BWR4 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
Usp40Q8BWR4 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC26.93■■□□□ 1.9
Usp40Q8BWR4 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC26.93■■□□□ 1.9
Usp40Q8BWR4 Gm42555-201ENSMUST00000199304 1039 ntBASIC26.93■■□□□ 1.9
Usp40Q8BWR4 AC112142.1-201ENSMUST00000228796 918 ntBASIC26.93■■□□□ 1.9
Usp40Q8BWR4 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Usp40Q8BWR4 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC26.92■■□□□ 1.9
Usp40Q8BWR4 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Usp40Q8BWR4 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Usp40Q8BWR4 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Usp40Q8BWR4 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Usp40Q8BWR4 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
Usp40Q8BWR4 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Usp40Q8BWR4 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
Usp40Q8BWR4 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Usp40Q8BWR4 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
Usp40Q8BWR4 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Usp40Q8BWR4 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
Usp40Q8BWR4 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
Usp40Q8BWR4 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms