Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Rnf220Q6PDX6 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.54
Rnf220Q6PDX6 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rnf220Q6PDX6 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Rnf220Q6PDX6 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Rnf220Q6PDX6 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.45■□□□□ 0.54
Rnf220Q6PDX6 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
Rnf220Q6PDX6 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rnf220Q6PDX6 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rnf220Q6PDX6 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Rnf220Q6PDX6 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rnf220Q6PDX6 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf220Q6PDX6 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.43■□□□□ 0.54
Rnf220Q6PDX6 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
Rnf220Q6PDX6 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf220Q6PDX6 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf220Q6PDX6 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf220Q6PDX6 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf220Q6PDX6 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Rnf220Q6PDX6 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf220Q6PDX6 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf220Q6PDX6 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf220Q6PDX6 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf220Q6PDX6 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf220Q6PDX6 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf220Q6PDX6 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Rnf220Q6PDX6 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf220Q6PDX6 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.42■□□□□ 0.54
Rnf220Q6PDX6 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf220Q6PDX6 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf220Q6PDX6 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC18.42■□□□□ 0.54
Rnf220Q6PDX6 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf220Q6PDX6 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf220Q6PDX6 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf220Q6PDX6 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf220Q6PDX6 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC18.41■□□□□ 0.54
Rnf220Q6PDX6 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf220Q6PDX6 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf220Q6PDX6 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf220Q6PDX6 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Rnf220Q6PDX6 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC18.4■□□□□ 0.54
Rnf220Q6PDX6 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Rnf220Q6PDX6 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf220Q6PDX6 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf220Q6PDX6 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Rnf220Q6PDX6 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf220Q6PDX6 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf220Q6PDX6 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf220Q6PDX6 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Rnf220Q6PDX6 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Rnf220Q6PDX6 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Rnf220Q6PDX6 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rnf220Q6PDX6 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rnf220Q6PDX6 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
Rnf220Q6PDX6 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC18.39■□□□□ 0.53
Rnf220Q6PDX6 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC18.39■□□□□ 0.53
Rnf220Q6PDX6 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Rnf220Q6PDX6 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rnf220Q6PDX6 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rnf220Q6PDX6 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rnf220Q6PDX6 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rnf220Q6PDX6 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC18.38■□□□□ 0.53
Rnf220Q6PDX6 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rnf220Q6PDX6 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rnf220Q6PDX6 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Rnf220Q6PDX6 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Rnf220Q6PDX6 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.38■□□□□ 0.53
Rnf220Q6PDX6 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rnf220Q6PDX6 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rnf220Q6PDX6 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC18.37■□□□□ 0.53
Rnf220Q6PDX6 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms