Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Trim28Q62318 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Trim28Q62318 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC25.73■■□□□ 1.71
Trim28Q62318 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Trim28Q62318 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Trim28Q62318 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
Trim28Q62318 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Trim28Q62318 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC25.72■■□□□ 1.71
Trim28Q62318 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Trim28Q62318 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Trim28Q62318 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
Trim28Q62318 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC25.71■■□□□ 1.71
Trim28Q62318 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trim28Q62318 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trim28Q62318 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Trim28Q62318 CT010467.1-202ENSMUST00000205406 714 ntBASIC25.71■■□□□ 1.71
Trim28Q62318 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC25.71■■□□□ 1.71
Trim28Q62318 Ap3s1-204ENSMUST00000225520 957 ntBASIC25.71■■□□□ 1.71
Trim28Q62318 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trim28Q62318 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trim28Q62318 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC25.71■■□□□ 1.71
Trim28Q62318 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC25.7■■□□□ 1.7
Trim28Q62318 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC25.7■■□□□ 1.7
Trim28Q62318 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC25.7■■□□□ 1.7
Trim28Q62318 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Trim28Q62318 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Trim28Q62318 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Trim28Q62318 Gm38205-201ENSMUST00000192243 258 ntBASIC25.69■■□□□ 1.7
Trim28Q62318 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
Trim28Q62318 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Trim28Q62318 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Trim28Q62318 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Trim28Q62318 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
Trim28Q62318 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
Trim28Q62318 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
Trim28Q62318 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC25.68■■□□□ 1.7
Trim28Q62318 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Trim28Q62318 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Trim28Q62318 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC25.68■■□□□ 1.7
Trim28Q62318 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
Trim28Q62318 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC25.68■■□□□ 1.7
Trim28Q62318 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Trim28Q62318 Gm38160-201ENSMUST00000193090 2499 ntBASIC25.68■■□□□ 1.7
Trim28Q62318 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
Trim28Q62318 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Trim28Q62318 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC25.67■■□□□ 1.7
Trim28Q62318 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Trim28Q62318 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Trim28Q62318 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC25.66■■□□□ 1.7
Trim28Q62318 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Trim28Q62318 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC25.66■■□□□ 1.7
Trim28Q62318 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
Trim28Q62318 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Trim28Q62318 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Trim28Q62318 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Trim28Q62318 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
Trim28Q62318 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Trim28Q62318 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC25.65■■□□□ 1.7
Trim28Q62318 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC25.65■■□□□ 1.7
Trim28Q62318 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
Trim28Q62318 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Trim28Q62318 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Trim28Q62318 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Trim28Q62318 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.7
Trim28Q62318 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
Trim28Q62318 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC25.64■■□□□ 1.7
Trim28Q62318 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Trim28Q62318 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
Trim28Q62318 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
Trim28Q62318 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Trim28Q62318 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Trim28Q62318 Gm20100-201ENSMUST00000209418 2272 ntBASIC25.63■■□□□ 1.69
Trim28Q62318 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC25.63■■□□□ 1.69
Trim28Q62318 Gm6277-202ENSMUST00000224036 2779 ntBASIC25.62■■□□□ 1.69
Trim28Q62318 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
Trim28Q62318 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Trim28Q62318 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC25.62■■□□□ 1.69
Trim28Q62318 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Trim28Q62318 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Trim28Q62318 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC25.62■■□□□ 1.69
Trim28Q62318 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Trim28Q62318 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC25.62■■□□□ 1.69
Trim28Q62318 Gm7514-201ENSMUST00000209475 934 ntBASIC25.62■■□□□ 1.69
Trim28Q62318 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Trim28Q62318 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Trim28Q62318 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Trim28Q62318 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Trim28Q62318 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trim28Q62318 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trim28Q62318 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trim28Q62318 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trim28Q62318 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Trim28Q62318 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
Trim28Q62318 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC25.61■■□□□ 1.69
Trim28Q62318 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trim28Q62318 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Trim28Q62318 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trim28Q62318 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC25.6■■□□□ 1.69
Trim28Q62318 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Trim28Q62318 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms