Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Gm12896-201ENSMUST00000118430 226 ntBASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Arhgef33-211ENSMUST00000225658 473 ntBASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col27a1Q5QNQ9 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col27a1Q5QNQ9 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.29■□□□□ 0.68
Col27a1Q5QNQ9 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col27a1Q5QNQ9 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col27a1Q5QNQ9 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC19.29■□□□□ 0.68
Col27a1Q5QNQ9 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col27a1Q5QNQ9 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Col27a1Q5QNQ9 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Col27a1Q5QNQ9 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Col27a1Q5QNQ9 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Col27a1Q5QNQ9 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC19.28■□□□□ 0.68
Col27a1Q5QNQ9 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Col27a1Q5QNQ9 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Col27a1Q5QNQ9 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Col27a1Q5QNQ9 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col27a1Q5QNQ9 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.28■□□□□ 0.68
Col27a1Q5QNQ9 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col27a1Q5QNQ9 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col27a1Q5QNQ9 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Col27a1Q5QNQ9 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC19.27■□□□□ 0.68
Col27a1Q5QNQ9 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col27a1Q5QNQ9 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col27a1Q5QNQ9 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col27a1Q5QNQ9 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.27■□□□□ 0.68
Col27a1Q5QNQ9 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col27a1Q5QNQ9 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col27a1Q5QNQ9 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Col27a1Q5QNQ9 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col27a1Q5QNQ9 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col27a1Q5QNQ9 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col27a1Q5QNQ9 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col27a1Q5QNQ9 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col27a1Q5QNQ9 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col27a1Q5QNQ9 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col27a1Q5QNQ9 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col27a1Q5QNQ9 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col27a1Q5QNQ9 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col27a1Q5QNQ9 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col27a1Q5QNQ9 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col27a1Q5QNQ9 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col27a1Q5QNQ9 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col27a1Q5QNQ9 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.25■□□□□ 0.67
Col27a1Q5QNQ9 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC19.25■□□□□ 0.67
Col27a1Q5QNQ9 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col27a1Q5QNQ9 Dio3-201ENSMUST00000097228 1449 ntBASIC19.25■□□□□ 0.67
Col27a1Q5QNQ9 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col27a1Q5QNQ9 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col27a1Q5QNQ9 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Col27a1Q5QNQ9 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col27a1Q5QNQ9 Gm10698-201ENSMUST00000182663 604 ntBASIC19.24■□□□□ 0.67
Col27a1Q5QNQ9 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Col27a1Q5QNQ9 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.24■□□□□ 0.67
Col27a1Q5QNQ9 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col27a1Q5QNQ9 AC131586.2-201ENSMUST00000228370 1512 ntBASIC19.23■□□□□ 0.67
Col27a1Q5QNQ9 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col27a1Q5QNQ9 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col27a1Q5QNQ9 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Col27a1Q5QNQ9 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Col27a1Q5QNQ9 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col27a1Q5QNQ9 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Col27a1Q5QNQ9 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC19.22■□□□□ 0.67
Col27a1Q5QNQ9 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
Col27a1Q5QNQ9 AC153881.2-201ENSMUST00000214877 204 ntBASIC19.22■□□□□ 0.67
Col27a1Q5QNQ9 AC154266.1-201ENSMUST00000223190 503 ntBASIC19.22■□□□□ 0.67
Col27a1Q5QNQ9 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
Col27a1Q5QNQ9 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Col27a1Q5QNQ9 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col27a1Q5QNQ9 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col27a1Q5QNQ9 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col27a1Q5QNQ9 AL672049.1-201ENSMUST00000197943 91 ntBASIC19.21■□□□□ 0.67
Col27a1Q5QNQ9 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col27a1Q5QNQ9 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col27a1Q5QNQ9 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col27a1Q5QNQ9 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col27a1Q5QNQ9 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col27a1Q5QNQ9 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col27a1Q5QNQ9 Gm13509-201ENSMUST00000119733 1308 ntBASIC19.2■□□□□ 0.66
Col27a1Q5QNQ9 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col27a1Q5QNQ9 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col27a1Q5QNQ9 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC19.2■□□□□ 0.66
Col27a1Q5QNQ9 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Col27a1Q5QNQ9 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms