Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Upf3aQ3ULJ3 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Upf3aQ3ULJ3 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Upf3aQ3ULJ3 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.66■□□□□ 0.9
Upf3aQ3ULJ3 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Upf3aQ3ULJ3 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Upf3aQ3ULJ3 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Upf3aQ3ULJ3 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Upf3aQ3ULJ3 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Upf3aQ3ULJ3 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.66■□□□□ 0.9
Upf3aQ3ULJ3 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf3aQ3ULJ3 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf3aQ3ULJ3 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf3aQ3ULJ3 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Upf3aQ3ULJ3 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Upf3aQ3ULJ3 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.65■□□□□ 0.9
Upf3aQ3ULJ3 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf3aQ3ULJ3 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf3aQ3ULJ3 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf3aQ3ULJ3 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf3aQ3ULJ3 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Upf3aQ3ULJ3 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Upf3aQ3ULJ3 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Upf3aQ3ULJ3 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Upf3aQ3ULJ3 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Upf3aQ3ULJ3 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Upf3aQ3ULJ3 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Upf3aQ3ULJ3 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Upf3aQ3ULJ3 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC20.64■□□□□ 0.89
Upf3aQ3ULJ3 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Upf3aQ3ULJ3 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
Upf3aQ3ULJ3 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Upf3aQ3ULJ3 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
Upf3aQ3ULJ3 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Upf3aQ3ULJ3 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3aQ3ULJ3 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3aQ3ULJ3 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3aQ3ULJ3 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3aQ3ULJ3 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3aQ3ULJ3 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.63■□□□□ 0.89
Upf3aQ3ULJ3 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3aQ3ULJ3 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3aQ3ULJ3 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3aQ3ULJ3 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3aQ3ULJ3 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Upf3aQ3ULJ3 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Gm13148-201ENSMUST00000118892 745 ntBASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Gm10653-202ENSMUST00000139570 835 ntBASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Nespas-201ENSMUST00000143738 1083 ntBASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Upf3aQ3ULJ3 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Gm7290-201ENSMUST00000104990 617 ntBASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Gm12918-201ENSMUST00000120234 636 ntBASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Gm15710-201ENSMUST00000121821 636 ntBASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Gm5075-201ENSMUST00000196916 622 ntBASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3aQ3ULJ3 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3aQ3ULJ3 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3aQ3ULJ3 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3aQ3ULJ3 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
Upf3aQ3ULJ3 Gm13534-201ENSMUST00000121169 513 ntBASIC20.6■□□□□ 0.89
Upf3aQ3ULJ3 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.6■□□□□ 0.89
Upf3aQ3ULJ3 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.6■□□□□ 0.89
Upf3aQ3ULJ3 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC20.6■□□□□ 0.89
Upf3aQ3ULJ3 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.6■□□□□ 0.89
Upf3aQ3ULJ3 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3aQ3ULJ3 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3aQ3ULJ3 AA386476-201ENSMUST00000098781 1665 ntBASIC20.6■□□□□ 0.89
Upf3aQ3ULJ3 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3aQ3ULJ3 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf3aQ3ULJ3 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf3aQ3ULJ3 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf3aQ3ULJ3 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf3aQ3ULJ3 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.59■□□□□ 0.89
Upf3aQ3ULJ3 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms