Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC19.39■□□□□ 0.69
Col9a1Q05722 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col9a1Q05722 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col9a1Q05722 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col9a1Q05722 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col9a1Q05722 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col9a1Q05722 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC19.39■□□□□ 0.69
Col9a1Q05722 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col9a1Q05722 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Col9a1Q05722 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col9a1Q05722 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col9a1Q05722 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col9a1Q05722 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC19.38■□□□□ 0.69
Col9a1Q05722 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col9a1Q05722 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col9a1Q05722 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col9a1Q05722 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Col9a1Q05722 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Col9a1Q05722 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.37■□□□□ 0.69
Col9a1Q05722 Gm8668-201ENSMUST00000120559 1447 ntBASIC19.37■□□□□ 0.69
Col9a1Q05722 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC19.37■□□□□ 0.69
Col9a1Q05722 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col9a1Q05722 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Col9a1Q05722 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col9a1Q05722 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col9a1Q05722 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Col9a1Q05722 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col9a1Q05722 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col9a1Q05722 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col9a1Q05722 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col9a1Q05722 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col9a1Q05722 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col9a1Q05722 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC19.36■□□□□ 0.69
Col9a1Q05722 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col9a1Q05722 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col9a1Q05722 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col9a1Q05722 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col9a1Q05722 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Col9a1Q05722 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
Col9a1Q05722 Gm15378-201ENSMUST00000121894 207 ntBASIC19.35■□□□□ 0.69
Col9a1Q05722 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC19.35■□□□□ 0.69
Col9a1Q05722 Mir5122-201ENSMUST00000175004 89 ntBASIC19.35■□□□□ 0.69
Col9a1Q05722 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Col9a1Q05722 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Col9a1Q05722 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col9a1Q05722 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col9a1Q05722 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col9a1Q05722 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col9a1Q05722 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col9a1Q05722 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Col9a1Q05722 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC19.34■□□□□ 0.69
Col9a1Q05722 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col9a1Q05722 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC19.34■□□□□ 0.69
Col9a1Q05722 Gm10655-201ENSMUST00000098658 1397 ntBASIC19.34■□□□□ 0.69
Col9a1Q05722 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.34■□□□□ 0.69
Col9a1Q05722 Ank2-226ENSMUST00000189368 339 ntBASIC19.34■□□□□ 0.69
Col9a1Q05722 Gm18666-201ENSMUST00000190039 958 ntBASIC19.34■□□□□ 0.69
Col9a1Q05722 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Col9a1Q05722 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col9a1Q05722 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col9a1Q05722 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col9a1Q05722 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col9a1Q05722 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col9a1Q05722 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.33■□□□□ 0.68
Col9a1Q05722 Gm33142-201ENSMUST00000193913 867 ntBASIC19.33■□□□□ 0.68
Col9a1Q05722 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col9a1Q05722 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col9a1Q05722 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col9a1Q05722 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col9a1Q05722 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col9a1Q05722 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col9a1Q05722 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC19.32■□□□□ 0.68
Col9a1Q05722 Gm2559-201ENSMUST00000201323 363 ntBASIC19.32■□□□□ 0.68
Col9a1Q05722 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col9a1Q05722 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC19.32■□□□□ 0.68
Col9a1Q05722 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.32■□□□□ 0.68
Col9a1Q05722 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col9a1Q05722 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col9a1Q05722 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col9a1Q05722 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col9a1Q05722 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col9a1Q05722 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col9a1Q05722 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.31■□□□□ 0.68
Col9a1Q05722 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.31■□□□□ 0.68
Col9a1Q05722 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col9a1Q05722 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col9a1Q05722 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col9a1Q05722 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col9a1Q05722 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Col9a1Q05722 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC19.3■□□□□ 0.68
Col9a1Q05722 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Col9a1Q05722 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col9a1Q05722 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col9a1Q05722 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Col9a1Q05722 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Col9a1Q05722 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col9a1Q05722 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col9a1Q05722 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col9a1Q05722 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col9a1Q05722 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms