Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Nkx3-1P97436 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Nkx3-1P97436 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC16.91■□□□□ 0.3
Nkx3-1P97436 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Nkx3-1P97436 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Nkx3-1P97436 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Nkx3-1P97436 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Nkx3-1P97436 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Nkx3-1P97436 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Nkx3-1P97436 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Nkx3-1P97436 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Nkx3-1P97436 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC16.9■□□□□ 0.3
Nkx3-1P97436 Gm7514-201ENSMUST00000209475 934 ntBASIC16.9■□□□□ 0.3
Nkx3-1P97436 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Nkx3-1P97436 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Nkx3-1P97436 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Nkx3-1P97436 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Nkx3-1P97436 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Nkx3-1P97436 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Nkx3-1P97436 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Nkx3-1P97436 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
Nkx3-1P97436 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Nkx3-1P97436 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Nkx3-1P97436 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Nkx3-1P97436 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Nkx3-1P97436 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Nkx3-1P97436 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC16.89■□□□□ 0.29
Nkx3-1P97436 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Nkx3-1P97436 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Nkx3-1P97436 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Nkx3-1P97436 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Ap3s1-204ENSMUST00000225520 957 ntBASIC16.88■□□□□ 0.29
Nkx3-1P97436 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Nkx3-1P97436 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Nkx3-1P97436 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Gm12504-201ENSMUST00000120860 2231 ntBASIC16.86■□□□□ 0.29
Nkx3-1P97436 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Nkx3-1P97436 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Nkx3-1P97436 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Nkx3-1P97436 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Nkx3-1P97436 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Nkx3-1P97436 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Nkx3-1P97436 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
Nkx3-1P97436 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Nkx3-1P97436 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC16.85■□□□□ 0.29
Nkx3-1P97436 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Nkx3-1P97436 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Nkx3-1P97436 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nkx3-1P97436 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nkx3-1P97436 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nkx3-1P97436 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC16.84■□□□□ 0.29
Nkx3-1P97436 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nkx3-1P97436 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC16.84■□□□□ 0.29
Nkx3-1P97436 Gm12669-201ENSMUST00000122162 1009 ntBASIC16.84■□□□□ 0.29
Nkx3-1P97436 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Nkx3-1P97436 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC16.84■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms