Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 AC122769.4-201ENSMUST00000228166 901 ntBASIC30.58■■■□□ 2.49
Cux1P53564 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC30.58■■■□□ 2.49
Cux1P53564 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC30.58■■■□□ 2.49
Cux1P53564 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Cux1P53564 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Cux1P53564 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Cux1P53564 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC30.57■■■□□ 2.49
Cux1P53564 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Cux1P53564 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
Cux1P53564 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Cux1P53564 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Cux1P53564 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
Cux1P53564 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Cux1P53564 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Cux1P53564 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
Cux1P53564 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Cux1P53564 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
Cux1P53564 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Cux1P53564 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Cux1P53564 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC30.55■■■□□ 2.48
Cux1P53564 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Cux1P53564 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Cux1P53564 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Cux1P53564 Gm5408-201ENSMUST00000197998 747 ntBASIC30.55■■■□□ 2.48
Cux1P53564 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
Cux1P53564 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC30.55■■■□□ 2.48
Cux1P53564 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC30.54■■■□□ 2.48
Cux1P53564 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
Cux1P53564 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
Cux1P53564 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Cux1P53564 Gm20760-201ENSMUST00000179197 648 ntBASIC30.53■■■□□ 2.48
Cux1P53564 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
Cux1P53564 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Cux1P53564 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Cux1P53564 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Cux1P53564 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC30.53■■■□□ 2.48
Cux1P53564 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Cux1P53564 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Cux1P53564 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Cux1P53564 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Cux1P53564 Gm20049-201ENSMUST00000219950 730 ntBASIC30.52■■■□□ 2.48
Cux1P53564 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Cux1P53564 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Cux1P53564 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC30.52■■■□□ 2.48
Cux1P53564 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Cux1P53564 Gm12504-201ENSMUST00000120860 2231 ntBASIC30.52■■■□□ 2.48
Cux1P53564 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
Cux1P53564 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Cux1P53564 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Cux1P53564 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC30.52■■■□□ 2.48
Cux1P53564 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC30.52■■■□□ 2.48
Cux1P53564 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Cux1P53564 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Cux1P53564 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Cux1P53564 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
Cux1P53564 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Cux1P53564 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Cux1P53564 AA386476-201ENSMUST00000098781 1665 ntBASIC30.51■■■□□ 2.47
Cux1P53564 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
Cux1P53564 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC30.51■■■□□ 2.47
Cux1P53564 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC30.51■■■□□ 2.47
Cux1P53564 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC30.51■■■□□ 2.47
Cux1P53564 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC30.5■■■□□ 2.47
Cux1P53564 Gm6365-201ENSMUST00000054711 744 ntBASIC30.5■■■□□ 2.47
Cux1P53564 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC30.5■■■□□ 2.47
Cux1P53564 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
Cux1P53564 Cdkn3-203ENSMUST00000227149 1952 ntBASIC30.5■■■□□ 2.47
Cux1P53564 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Cux1P53564 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC30.49■■■□□ 2.47
Cux1P53564 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC30.49■■■□□ 2.47
Cux1P53564 Gm15043-201ENSMUST00000118843 1543 ntBASIC30.49■■■□□ 2.47
Cux1P53564 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
Cux1P53564 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC30.48■■■□□ 2.47
Cux1P53564 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Cux1P53564 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Cux1P53564 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC30.47■■■□□ 2.47
Cux1P53564 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC30.47■■■□□ 2.47
Cux1P53564 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Cux1P53564 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC30.47■■■□□ 2.47
Cux1P53564 Gm37035-201ENSMUST00000194809 2148 ntBASIC30.47■■■□□ 2.47
Cux1P53564 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC30.47■■■□□ 2.47
Cux1P53564 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Cux1P53564 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC30.46■■■□□ 2.47
Cux1P53564 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC30.46■■■□□ 2.47
Cux1P53564 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC30.46■■■□□ 2.47
Cux1P53564 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Cux1P53564 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Cux1P53564 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Cux1P53564 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Cux1P53564 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC30.45■■■□□ 2.46
Cux1P53564 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Cux1P53564 Gm3807-201ENSMUST00000193520 1168 ntBASIC30.44■■■□□ 2.46
Cux1P53564 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Cux1P53564 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Cux1P53564 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Cux1P53564 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
Cux1P53564 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC30.43■■■□□ 2.46
Cux1P53564 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Cux1P53564 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Cux1P53564 Gm37856-201ENSMUST00000191634 999 ntBASIC30.43■■■□□ 2.46
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms