Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx3P48381 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx3P48381 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx3P48381 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx3P48381 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC17.59■□□□□ 0.41
Rfx3P48381 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Rfx3P48381 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rfx3P48381 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rfx3P48381 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rfx3P48381 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx3P48381 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx3P48381 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC17.58■□□□□ 0.4
Rfx3P48381 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC17.58■□□□□ 0.4
Rfx3P48381 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx3P48381 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx3P48381 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx3P48381 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx3P48381 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx3P48381 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx3P48381 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC17.57■□□□□ 0.4
Rfx3P48381 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC17.57■□□□□ 0.4
Rfx3P48381 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx3P48381 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx3P48381 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx3P48381 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx3P48381 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx3P48381 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx3P48381 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx3P48381 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx3P48381 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx3P48381 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx3P48381 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Rfx3P48381 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx3P48381 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
Rfx3P48381 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
Rfx3P48381 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx3P48381 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx3P48381 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx3P48381 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx3P48381 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx3P48381 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC17.55■□□□□ 0.4
Rfx3P48381 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC17.55■□□□□ 0.4
Rfx3P48381 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC17.55■□□□□ 0.4
Rfx3P48381 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Rfx3P48381 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx3P48381 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx3P48381 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx3P48381 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx3P48381 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx3P48381 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx3P48381 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Rfx3P48381 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx3P48381 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC17.54■□□□□ 0.4
Rfx3P48381 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx3P48381 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx3P48381 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx3P48381 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx3P48381 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx3P48381 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx3P48381 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx3P48381 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx3P48381 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC17.53■□□□□ 0.4
Rfx3P48381 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx3P48381 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx3P48381 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx3P48381 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx3P48381 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Rfx3P48381 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Rfx3P48381 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx3P48381 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx3P48381 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Rfx3P48381 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx3P48381 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx3P48381 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Rfx3P48381 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx3P48381 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx3P48381 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx3P48381 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.53■□□□□ 0.4
Rfx3P48381 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx3P48381 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx3P48381 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx3P48381 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx3P48381 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx3P48381 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx3P48381 Krt8-ps-201ENSMUST00000208495 945 ntBASIC17.52■□□□□ 0.4
Rfx3P48381 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx3P48381 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx3P48381 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC17.52■□□□□ 0.4
Rfx3P48381 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx3P48381 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rfx3P48381 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rfx3P48381 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
Rfx3P48381 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx3P48381 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Rfx3P48381 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC17.51■□□□□ 0.39
Rfx3P48381 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx3P48381 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx3P48381 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx3P48381 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
Rfx3P48381 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms