Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msx1P13297 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msx1P13297 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC18.51■□□□□ 0.55
Msx1P13297 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msx1P13297 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Msx1P13297 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Msx1P13297 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msx1P13297 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Msx1P13297 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Msx1P13297 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.5■□□□□ 0.55
Msx1P13297 Gm10209-201ENSMUST00000203397 1607 ntBASIC18.5■□□□□ 0.55
Msx1P13297 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Msx1P13297 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msx1P13297 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC18.5■□□□□ 0.55
Msx1P13297 Gm10033-202ENSMUST00000211874 928 ntBASIC18.5■□□□□ 0.55
Msx1P13297 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msx1P13297 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msx1P13297 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC18.5■□□□□ 0.55
Msx1P13297 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msx1P13297 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Msx1P13297 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Msx1P13297 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Msx1P13297 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Msx1P13297 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msx1P13297 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msx1P13297 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msx1P13297 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msx1P13297 Mir6236-201ENSMUST00000184437 123 ntBASIC18.49■□□□□ 0.55
Msx1P13297 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC18.49■□□□□ 0.55
Msx1P13297 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msx1P13297 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msx1P13297 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Msx1P13297 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
Msx1P13297 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msx1P13297 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Msx1P13297 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Msx1P13297 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msx1P13297 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Msx1P13297 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Msx1P13297 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC18.48■□□□□ 0.55
Msx1P13297 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msx1P13297 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msx1P13297 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msx1P13297 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msx1P13297 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msx1P13297 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msx1P13297 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msx1P13297 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msx1P13297 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msx1P13297 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.47■□□□□ 0.55
Msx1P13297 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC18.47■□□□□ 0.55
Msx1P13297 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Msx1P13297 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Msx1P13297 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msx1P13297 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC18.47■□□□□ 0.55
Msx1P13297 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.47■□□□□ 0.55
Msx1P13297 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
Msx1P13297 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.47■□□□□ 0.55
Msx1P13297 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msx1P13297 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Msx1P13297 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msx1P13297 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msx1P13297 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Msx1P13297 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msx1P13297 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msx1P13297 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msx1P13297 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msx1P13297 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
Msx1P13297 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msx1P13297 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msx1P13297 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msx1P13297 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msx1P13297 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Msx1P13297 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msx1P13297 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msx1P13297 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Msx1P13297 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msx1P13297 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msx1P13297 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Msx1P13297 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msx1P13297 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msx1P13297 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC18.45■□□□□ 0.54
Msx1P13297 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msx1P13297 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC18.45■□□□□ 0.54
Msx1P13297 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msx1P13297 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msx1P13297 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msx1P13297 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
Msx1P13297 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Msx1P13297 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msx1P13297 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Msx1P13297 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC18.44■□□□□ 0.54
Msx1P13297 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msx1P13297 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msx1P13297 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msx1P13297 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msx1P13297 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Msx1P13297 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC18.43■□□□□ 0.54
Msx1P13297 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Msx1P13297 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms