Protein–RNA interactions for Protein: P09631

Hoxa9, Homeobox protein Hox-A9, mousemouse

Predictions only

Length 271 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa9P09631 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC19.7■□□□□ 0.74
Hoxa9P09631 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.7■□□□□ 0.74
Hoxa9P09631 CT025689.6-201ENSMUST00000224991 1104 ntBASIC19.7■□□□□ 0.74
Hoxa9P09631 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC19.7■□□□□ 0.74
Hoxa9P09631 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hoxa9P09631 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hoxa9P09631 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hoxa9P09631 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hoxa9P09631 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.69■□□□□ 0.74
Hoxa9P09631 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Hoxa9P09631 Gm34220-201ENSMUST00000223001 2709 ntBASIC19.69■□□□□ 0.74
Hoxa9P09631 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Hoxa9P09631 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Hoxa9P09631 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hoxa9P09631 Gm10602-201ENSMUST00000098239 609 ntBASIC19.69■□□□□ 0.74
Hoxa9P09631 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hoxa9P09631 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Hoxa9P09631 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hoxa9P09631 Reep4-203ENSMUST00000226563 1444 ntBASIC19.68■□□□□ 0.74
Hoxa9P09631 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Hoxa9P09631 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hoxa9P09631 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hoxa9P09631 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Hoxa9P09631 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hoxa9P09631 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hoxa9P09631 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Hoxa9P09631 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hoxa9P09631 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hoxa9P09631 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Hoxa9P09631 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
Hoxa9P09631 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hoxa9P09631 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC19.67■□□□□ 0.74
Hoxa9P09631 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hoxa9P09631 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hoxa9P09631 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Hoxa9P09631 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hoxa9P09631 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hoxa9P09631 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hoxa9P09631 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hoxa9P09631 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Hoxa9P09631 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Hoxa9P09631 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hoxa9P09631 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Hoxa9P09631 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hoxa9P09631 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hoxa9P09631 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hoxa9P09631 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hoxa9P09631 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hoxa9P09631 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hoxa9P09631 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Hoxa9P09631 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hoxa9P09631 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hoxa9P09631 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hoxa9P09631 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Hoxa9P09631 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hoxa9P09631 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hoxa9P09631 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Hoxa9P09631 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hoxa9P09631 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hoxa9P09631 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Hoxa9P09631 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
Hoxa9P09631 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
Hoxa9P09631 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Hoxa9P09631 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Hoxa9P09631 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC19.64■□□□□ 0.73
Hoxa9P09631 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC19.64■□□□□ 0.73
Hoxa9P09631 AC112142.1-201ENSMUST00000228796 918 ntBASIC19.64■□□□□ 0.73
Hoxa9P09631 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Hoxa9P09631 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Hoxa9P09631 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Hoxa9P09631 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Hoxa9P09631 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Hoxa9P09631 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hoxa9P09631 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hoxa9P09631 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hoxa9P09631 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hoxa9P09631 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC19.63■□□□□ 0.73
Hoxa9P09631 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Hoxa9P09631 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Hoxa9P09631 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Hoxa9P09631 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC19.63■□□□□ 0.73
Hoxa9P09631 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hoxa9P09631 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa9P09631 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa9P09631 AC152827.1-201ENSMUST00000221143 2189 ntBASIC19.62■□□□□ 0.73
Hoxa9P09631 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Hoxa9P09631 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC19.62■□□□□ 0.73
Hoxa9P09631 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa9P09631 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa9P09631 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa9P09631 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa9P09631 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa9P09631 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa9P09631 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hoxa9P09631 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hoxa9P09631 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Hoxa9P09631 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hoxa9P09631 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hoxa9P09631 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hoxa9P09631 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms