Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC21.71■■□□□ 1.07
Prom1O54990 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Prom1O54990 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.07
Prom1O54990 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Prom1O54990 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Prom1O54990 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Prom1O54990 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Prom1O54990 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC21.7■■□□□ 1.06
Prom1O54990 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Prom1O54990 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Prom1O54990 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Prom1O54990 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Prom1O54990 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Prom1O54990 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Prom1O54990 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC21.69■■□□□ 1.06
Prom1O54990 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Prom1O54990 Gm13146-201ENSMUST00000118508 780 ntBASIC21.69■■□□□ 1.06
Prom1O54990 Mir5133-201ENSMUST00000174955 77 ntBASIC21.69■■□□□ 1.06
Prom1O54990 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Prom1O54990 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Prom1O54990 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Prom1O54990 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC21.69■■□□□ 1.06
Prom1O54990 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Prom1O54990 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Prom1O54990 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Prom1O54990 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Prom1O54990 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prom1O54990 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prom1O54990 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC21.68■■□□□ 1.06
Prom1O54990 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prom1O54990 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC21.68■■□□□ 1.06
Prom1O54990 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Prom1O54990 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Prom1O54990 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Prom1O54990 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prom1O54990 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Prom1O54990 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Prom1O54990 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Prom1O54990 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Prom1O54990 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Prom1O54990 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Prom1O54990 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Prom1O54990 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC21.67■■□□□ 1.06
Prom1O54990 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Prom1O54990 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Prom1O54990 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Prom1O54990 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Prom1O54990 Gm13148-201ENSMUST00000118892 745 ntBASIC21.66■■□□□ 1.06
Prom1O54990 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
Prom1O54990 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Prom1O54990 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Prom1O54990 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC21.66■■□□□ 1.06
Prom1O54990 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
Prom1O54990 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Prom1O54990 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Prom1O54990 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Prom1O54990 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Prom1O54990 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Prom1O54990 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Prom1O54990 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Prom1O54990 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Prom1O54990 Gm12441-201ENSMUST00000121806 588 ntBASIC21.65■■□□□ 1.06
Prom1O54990 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Prom1O54990 Gm6420-201ENSMUST00000193885 723 ntBASIC21.65■■□□□ 1.06
Prom1O54990 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Prom1O54990 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC21.65■■□□□ 1.06
Prom1O54990 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Prom1O54990 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Prom1O54990 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Prom1O54990 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Prom1O54990 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Prom1O54990 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Prom1O54990 Gm43909-201ENSMUST00000203443 1876 ntBASIC21.64■■□□□ 1.06
Prom1O54990 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
Prom1O54990 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Prom1O54990 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Prom1O54990 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Prom1O54990 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC21.64■■□□□ 1.05
Prom1O54990 Nespas-201ENSMUST00000143738 1083 ntBASIC21.64■■□□□ 1.05
Prom1O54990 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Prom1O54990 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Prom1O54990 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Prom1O54990 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Prom1O54990 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC21.63■■□□□ 1.05
Prom1O54990 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC21.63■■□□□ 1.05
Prom1O54990 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Prom1O54990 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC21.63■■□□□ 1.05
Prom1O54990 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC21.63■■□□□ 1.05
Prom1O54990 Gm4968-201ENSMUST00000071458 858 ntBASIC21.63■■□□□ 1.05
Prom1O54990 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Prom1O54990 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.63■■□□□ 1.05
Prom1O54990 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Prom1O54990 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Prom1O54990 AA386476-201ENSMUST00000098781 1665 ntBASIC21.63■■□□□ 1.05
Prom1O54990 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
Prom1O54990 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Prom1O54990 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Prom1O54990 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Prom1O54990 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC21.62■■□□□ 1.05
Prom1O54990 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms