Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Chd3B1AR17 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Chd3B1AR17 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Chd3B1AR17 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Chd3B1AR17 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.25■□□□□ 0.67
Chd3B1AR17 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
Chd3B1AR17 Gm13234-201ENSMUST00000120010 747 ntBASIC19.25■□□□□ 0.67
Chd3B1AR17 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Chd3B1AR17 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC19.25■□□□□ 0.67
Chd3B1AR17 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC19.25■□□□□ 0.67
Chd3B1AR17 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Chd3B1AR17 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Chd3B1AR17 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Chd3B1AR17 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Chd3B1AR17 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Chd3B1AR17 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Chd3B1AR17 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Chd3B1AR17 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chd3B1AR17 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chd3B1AR17 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Chd3B1AR17 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC19.24■□□□□ 0.67
Chd3B1AR17 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chd3B1AR17 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chd3B1AR17 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Chd3B1AR17 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chd3B1AR17 AA386476-201ENSMUST00000098781 1665 ntBASIC19.23■□□□□ 0.67
Chd3B1AR17 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Chd3B1AR17 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chd3B1AR17 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chd3B1AR17 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Chd3B1AR17 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Chd3B1AR17 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chd3B1AR17 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chd3B1AR17 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Chd3B1AR17 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC19.23■□□□□ 0.67
Chd3B1AR17 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Chd3B1AR17 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Chd3B1AR17 Gm29257-201ENSMUST00000186115 639 ntBASIC19.22■□□□□ 0.67
Chd3B1AR17 Gm15043-201ENSMUST00000118843 1543 ntBASIC19.22■□□□□ 0.67
Chd3B1AR17 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.22■□□□□ 0.67
Chd3B1AR17 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Chd3B1AR17 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
Chd3B1AR17 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chd3B1AR17 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chd3B1AR17 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC19.21■□□□□ 0.67
Chd3B1AR17 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chd3B1AR17 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Chd3B1AR17 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chd3B1AR17 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chd3B1AR17 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chd3B1AR17 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chd3B1AR17 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chd3B1AR17 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Chd3B1AR17 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chd3B1AR17 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Chd3B1AR17 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.21■□□□□ 0.67
Chd3B1AR17 Gm42569-201ENSMUST00000200539 472 ntBASIC19.21■□□□□ 0.67
Chd3B1AR17 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC19.21■□□□□ 0.67
Chd3B1AR17 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Chd3B1AR17 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.21■□□□□ 0.67
Chd3B1AR17 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Chd3B1AR17 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Chd3B1AR17 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Chd3B1AR17 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Chd3B1AR17 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Chd3B1AR17 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Chd3B1AR17 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Chd3B1AR17 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC19.2■□□□□ 0.66
Chd3B1AR17 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Chd3B1AR17 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC19.2■□□□□ 0.66
Chd3B1AR17 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Chd3B1AR17 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Chd3B1AR17 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC19.2■□□□□ 0.66
Chd3B1AR17 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Chd3B1AR17 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
Chd3B1AR17 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chd3B1AR17 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chd3B1AR17 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Chd3B1AR17 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chd3B1AR17 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chd3B1AR17 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chd3B1AR17 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chd3B1AR17 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chd3B1AR17 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chd3B1AR17 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Chd3B1AR17 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Chd3B1AR17 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC19.18■□□□□ 0.66
Chd3B1AR17 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Chd3B1AR17 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Chd3B1AR17 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Chd3B1AR17 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Chd3B1AR17 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Chd3B1AR17 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
Chd3B1AR17 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Chd3B1AR17 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Chd3B1AR17 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Chd3B1AR17 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Chd3B1AR17 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Chd3B1AR17 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Chd3B1AR17 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms