Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Gm43520-201ENSMUST00000197996 164 ntBASIC8.08□□□□□ -1.12
Hmgb3O54879 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Gm5311-201ENSMUST00000203518 709 ntBASIC8.08□□□□□ -1.12
Hmgb3O54879 Gm30873-201ENSMUST00000207512 1222 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 AC159819.2-201ENSMUST00000216151 342 ntBASIC8.08□□□□□ -1.12
Hmgb3O54879 Gm7904-201ENSMUST00000217049 465 ntBASIC8.08□□□□□ -1.12
Hmgb3O54879 AC124433.1-201ENSMUST00000224483 1063 ntBASIC8.08□□□□□ -1.12
Hmgb3O54879 Nnmt-201ENSMUST00000034808 1043 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 9030619P08Rik-201ENSMUST00000096397 857 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Stat1-203ENSMUST00000186057 3998 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Gabpa-202ENSMUST00000114184 2202 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Scn8a-204ENSMUST00000108909 11436 ntTSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Pcx-201ENSMUST00000068004 4148 ntAPPRIS ALT1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Egf-202ENSMUST00000197079 3346 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Gm15965-201ENSMUST00000123318 1428 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Lims1-201ENSMUST00000020077 1565 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Kctd19-202ENSMUST00000167294 2979 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Gm39312-201ENSMUST00000213586 2195 ntTSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Stx12-201ENSMUST00000030698 2934 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Prpf6-201ENSMUST00000002529 3054 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Hp1bp3-214ENSMUST00000165861 3361 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Gna14-201ENSMUST00000025602 3383 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Olfr282-203ENSMUST00000213608 1374 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Rbm43-206ENSMUST00000165313 1975 ntAPPRIS P1 TSL 3 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Ttll4-201ENSMUST00000042125 10019 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Clec7a-201ENSMUST00000112076 2277 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Tmem106a-202ENSMUST00000100403 2428 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Smad2-201ENSMUST00000025453 2410 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Gatad2b-205ENSMUST00000199754 7438 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Epb41-205ENSMUST00000105972 2577 ntAPPRIS P3 TSL 5 BASIC8.08□□□□□ -1.12
Hmgb3O54879 Hnrnpk-221ENSMUST00000177497 2585 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
Hmgb3O54879 Gm42777-201ENSMUST00000196026 3603 ntBASIC8.08□□□□□ -1.12
Hmgb3O54879 Card6-201ENSMUST00000118365 5995 ntAPPRIS P1 TSL 5 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Tbc1d8b-201ENSMUST00000096313 5094 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Lrit1-201ENSMUST00000120052 4325 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Zfp446-203ENSMUST00000108536 3705 ntAPPRIS ALT2 TSL 2 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Zc3h10-201ENSMUST00000040572 3721 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Lypd5-201ENSMUST00000032683 2239 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Wfdc8-202ENSMUST00000109338 1794 ntAPPRIS P3 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm37151-201ENSMUST00000194631 5007 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 Ttll2-201ENSMUST00000115747 1623 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Nrf1-203ENSMUST00000069831 1625 ntTSL 5 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Pax5-202ENSMUST00000102932 1460 ntTSL 5 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Sema4d-202ENSMUST00000110039 4415 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm29590-201ENSMUST00000190396 1304 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Ctsll3-201ENSMUST00000043754 1337 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Loxhd1-201ENSMUST00000035501 3814 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Mapk10-203ENSMUST00000112847 7196 ntAPPRIS P3 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Col25a1-202ENSMUST00000106353 6701 ntAPPRIS ALT2 TSL 5 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm38252-201ENSMUST00000192701 2616 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 Cpsf3-201ENSMUST00000067284 2499 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Krba1-204ENSMUST00000114572 4323 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Tpm1-213ENSMUST00000113697 1742 ntTSL 2 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Sox5-205ENSMUST00000111749 3879 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Cald1-202ENSMUST00000079391 4127 ntAPPRIS ALT2 TSL 5 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Rps19-ps3-201ENSMUST00000116174 426 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm15041-201ENSMUST00000119048 756 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm11246-201ENSMUST00000120880 345 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC8.07□□□□□ -1.12
Hmgb3O54879 9330154K18Rik-201ENSMUST00000176703 2104 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm23771-201ENSMUST00000178702 110 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm18014-201ENSMUST00000183369 817 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC8.07□□□□□ -1.12
Hmgb3O54879 4930486N12Rik-201ENSMUST00000206668 632 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 Lsm3-205ENSMUST00000206947 618 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm45670-201ENSMUST00000211382 711 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm45705-201ENSMUST00000211831 2134 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 AC149294.3-201ENSMUST00000226888 732 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Tbata-202ENSMUST00000079235 696 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Krtap4-1-201ENSMUST00000081007 1015 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm26782-201ENSMUST00000181482 2513 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Efcab12-203ENSMUST00000184428 2384 ntAPPRIS P1 TSL 5 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm34424-202ENSMUST00000214104 1652 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 AC132833.1-202ENSMUST00000228875 1690 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 Ubash3b-206ENSMUST00000151485 2231 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Zeb2-214ENSMUST00000177302 4020 ntAPPRIS P2 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Akr1c19-202ENSMUST00000118663 5832 ntAPPRIS P1 TSL 5 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Cbwd1-201ENSMUST00000025815 1944 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Btnl5-ps-201ENSMUST00000097346 1751 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 Arhgap12-201ENSMUST00000062584 2718 ntAPPRIS ALT2 TSL 5 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Syna-201ENSMUST00000149604 2026 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm38910-201ENSMUST00000204630 2448 ntBASIC8.07□□□□□ -1.12
Hmgb3O54879 Acbd5-202ENSMUST00000114523 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hmgb3O54879 Gm45477-201ENSMUST00000200213 5498 ntBASIC8.06□□□□□ -1.12
Hmgb3O54879 Syncrip-211ENSMUST00000174688 3176 ntTSL 5 BASIC8.06□□□□□ -1.12
Hmgb3O54879 Itgbl1-201ENSMUST00000049681 4065 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hmgb3O54879 Sgpl1-201ENSMUST00000092498 4070 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms